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BioLiP
>protein
HMKSVFVESTIFEKYRDEYLSDEEYRLFQAELMLNPKLGDVIQGTGGLRKIRVASKGKGKRGGSRIIYYFLDEKRRFYLL
TIYGKNEMSDLNANQRKQLMAFMEAWRNEQ

The query sequence (length=110) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8a0x:D 110 110 1.0000 1.0000 1.0000 1.41e-78 5ja8:C
2 4v7j:Ay 94 72 0.1545 0.1809 0.2361 1.5 4v7j:By, 4v7k:Ay, 4v7k:By
3 6pvk:U 90 54 0.1545 0.1889 0.3148 1.6
4 4bju:A 548 16 0.1000 0.0201 0.6875 5.4 4bju:B, 5o9x:A, 5oaw:A, 5oaw:B
5 2zwa:B 683 36 0.1182 0.0190 0.3611 5.6 2zw9:A, 2zw9:B, 2zwa:A
6 6hiv:Ab 453 38 0.1364 0.0331 0.3947 6.2 6hix:Ab

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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