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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRASVNAETVAPEFIVKVRK
KLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRVLDKHPELLNEIR

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3gn5:A 132 132 1.0000 1.0000 1.0000 1.74e-97 3ga8:A, 3gn5:B, 3hi2:A, 3hi2:C, 3o9x:A, 3o9x:B
2 8a0x:A 103 62 0.1061 0.1359 0.2258 1.83e-04 8a0w:A, 8a0w:B, 8a0x:B
3 7tmb:A 362 69 0.1364 0.0497 0.2609 0.59 7tmb:B, 7tmb:C, 7tmb:D, 7tmb:E, 7tmb:F
4 1gvr:A 364 90 0.1667 0.0604 0.2444 0.87 2aba:A, 2abb:A, 3f03:K, 6gi7:A, 6gi8:A, 6gi9:A, 6gia:A, 1gvo:A, 1gvq:A, 1gvs:A, 1h50:A, 1h51:A, 1h60:A, 1h61:A, 1h62:A, 1h63:A, 3kft:A, 3kft:B, 5lgx:A, 5lgz:A, 3p62:A, 3p67:A, 3p74:A, 3p7y:A, 3p80:A, 3p81:A, 3p82:A, 3p84:A, 3p8i:A, 3p8j:A, 1vyp:X, 1vyr:A, 1vys:X
5 4ccz:A 611 34 0.0682 0.0147 0.2647 1.2
6 8tac:B 66 38 0.1061 0.2121 0.3684 2.2
7 1o72:A 175 55 0.1061 0.0800 0.2545 2.5 1o72:B
8 6qkb:A 384 28 0.0985 0.0339 0.4643 3.7 6qkb:B
9 2yjg:A 418 26 0.0909 0.0287 0.4615 4.8 2yjg:B
10 4kx4:A 217 17 0.0606 0.0369 0.4706 5.4 7d9l:A, 7dkp:A, 7dkp:B, 7dkp:C, 7dkp:D
11 3ir4:A 218 17 0.0606 0.0367 0.4706 7.1
12 5aa5:A 345 39 0.1136 0.0435 0.3846 7.7 5aa5:B, 5aa5:D, 5aa5:F, 5aa5:H, 5aa5:M
13 4u39:D 280 40 0.0985 0.0464 0.3250 7.7 4u39:H, 4u39:I
14 7pd1:B 367 35 0.0985 0.0354 0.3714 8.6 7pd1:A, 7pd2:A, 7pd2:B
15 2rhl:B 315 40 0.0985 0.0413 0.3250 9.6 2rhl:A, 2rho:A, 2rho:B, 4u39:B, 4u39:E, 4u39:F, 4u39:G
16 5x11:E 181 26 0.0909 0.0663 0.4615 9.6 5x11:A, 5x11:B, 5x11:D, 5x11:C, 5x11:F, 5x11:H, 5x14:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218