Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HMISKINGKLFADMIIQGAQNLSNNADLVDSLNVYPVPDGDTGTNMNLTMTSGREEVENNLSKNIGELGKTFSKGLLMGA
RGNSGVILSQLFRGFCKNIESESEINSKLLAESFQAGVETAYKAVMKPVEGTILTVAKDAAQAAIEKANNTEDCIELMEY
IIVKANESLENTPNLLAVLKEVGVVDSGGKGLLCVYEGFLKALKGEKV

The query sequence (length=208) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7rm7:A 222 208 1.0000 0.9369 1.0000 2.72e-151 7rzk:A, 7snb:A, 7uq1:A
2 7w7h:A 541 205 0.5577 0.2144 0.5659 5.35e-77 7w7h:B
3 7ed6:A 203 199 0.3894 0.3990 0.4070 1.29e-49 7ed6:B, 7ed9:A, 7ed9:B
4 3cr3:A 192 170 0.1923 0.2083 0.2353 0.66 3cr3:B
5 7pbg:A 525 130 0.1538 0.0610 0.2462 0.87 7pbg:B, 7pbi:A, 7pbi:B, 7pbi:C, 7pbi:D, 7pbi:E, 7pbi:F, 7pbi:G, 7pbi:H
6 5ypz:A 480 61 0.1058 0.0458 0.3607 1.3 5ypz:C, 5ypz:B
7 7r07:F 600 53 0.0865 0.0300 0.3396 2.1 7r06:A, 7r06:F, 7r06:B, 7r06:E, 7r06:C, 7r06:D, 7r07:A, 7r07:B, 7r07:C, 7r07:D, 7r07:E
8 5uak:A 1139 139 0.1731 0.0316 0.2590 4.0 2bbs:B, 7svr:A, 8v81:A
9 5ju6:A 835 35 0.0673 0.0168 0.4000 4.8 5ju6:B, 5ju6:C, 5ju6:D
10 1mzj:A 334 107 0.1346 0.0838 0.2617 4.8 1mzj:B
11 2a1y:A 301 84 0.1298 0.0897 0.3214 5.1

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218