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BioLiP
>protein
HMHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ik5:C 67 67 1.0000 1.0000 1.0000 5.22e-44 8ike:C, 8ilw:C
2 5hod:A 61 58 0.5075 0.5574 0.5862 9.02e-19 5hod:D
3 1fjl:A 65 57 0.3284 0.3385 0.3860 1.96e-07 1fjl:B, 1fjl:C
4 2lkx:A 68 57 0.3433 0.3382 0.4035 2.14e-07
5 8osb:E 62 59 0.3731 0.4032 0.4237 2.97e-07
6 4rdu:D 62 60 0.3284 0.3548 0.3667 3.95e-07 4rdu:A, 4xrs:I, 4xrs:G
7 6es3:K 72 60 0.3284 0.3056 0.3667 4.25e-07 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
8 3a01:F 61 57 0.3433 0.3770 0.4035 4.40e-07 3a01:B, 3lnq:A
9 6e8c:A 135 54 0.3433 0.1704 0.4259 3.68e-06 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
10 6e8c:A 135 56 0.3134 0.1556 0.3750 6.30e-06 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
11 3cmy:A 60 57 0.3284 0.3667 0.3860 5.35e-06
12 6m3d:C 108 56 0.2836 0.1759 0.3393 1.17e-05 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
13 6m3d:C 108 51 0.2090 0.1296 0.2745 0.073 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
14 4qtr:C 57 54 0.2687 0.3158 0.3333 1.70e-05 4qtr:A, 4qtr:B, 4qtr:D
15 8pna:A 67 60 0.2985 0.2985 0.3333 1.74e-04 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
16 8ejo:A 56 54 0.2985 0.3571 0.3704 4.05e-04 8ejo:B, 8ejp:A, 8ejp:B
17 2d5v:A 135 50 0.2388 0.1185 0.3200 5.02e-04 2d5v:B, 8t0f:A, 8t11:A
18 2h1k:B 60 57 0.3134 0.3500 0.3684 7.55e-04 2h1k:A
19 1ig7:A 58 58 0.2985 0.3448 0.3448 0.001
20 2r5z:A 75 56 0.2836 0.2533 0.3393 0.002 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
21 1b72:A 68 54 0.2985 0.2941 0.3704 0.002
22 8eml:A 58 56 0.2985 0.3448 0.3571 0.002 8eml:B
23 1ahd:P 68 57 0.2836 0.2794 0.3333 0.003
24 2ld5:A 67 26 0.2090 0.2090 0.5385 0.003
25 1puf:A 77 66 0.3284 0.2857 0.3333 0.003 2lp0:A
26 3l1p:A 147 57 0.3134 0.1429 0.3684 0.003 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
27 1gt0:C 137 59 0.2836 0.1387 0.3220 0.003 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
28 5eea:G 63 29 0.2090 0.2222 0.4828 0.004 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
29 1lfu:P 82 33 0.1940 0.1585 0.3939 0.004 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
30 4cyc:A 66 58 0.2687 0.2727 0.3103 0.004 1b8i:A
31 4uus:A 67 54 0.2537 0.2537 0.3148 0.006 4uus:E
32 3d1n:I 150 54 0.2836 0.1267 0.3519 0.007 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
33 2me6:A 71 60 0.2836 0.2676 0.3167 0.007
34 1jgg:A 57 56 0.2985 0.3509 0.3571 0.007 1jgg:B
35 9b8u:B 66 50 0.2687 0.2727 0.3600 0.015 9b8u:A, 9b8u:C, 9b8u:D
36 5zjr:A 64 44 0.2388 0.2500 0.3636 0.055 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
37 8g8e:X 140 57 0.2985 0.1429 0.3509 0.063 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
38 4egc:A 539 52 0.2388 0.0297 0.3077 0.100
39 8bx1:A 127 45 0.2537 0.1339 0.3778 0.11
40 5wc9:A 136 55 0.2537 0.1250 0.3091 0.12 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
41 1nk2:P 77 28 0.1940 0.1688 0.4643 0.22 1nk3:P
42 3rkq:A 58 56 0.2388 0.2759 0.2857 0.36 3rkq:B
43 4xrm:B 64 28 0.1642 0.1719 0.3929 0.53 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
44 4rbo:A 55 27 0.1791 0.2182 0.4444 0.55 4rbo:D
45 1zq3:P 68 57 0.2388 0.2353 0.2807 0.89
46 7xrc:C 134 47 0.2388 0.1194 0.3404 1.0 2xsd:C
47 3fxb:A 310 30 0.1940 0.0419 0.4333 1.2 3fxb:B
48 5flv:M 229 28 0.1791 0.0524 0.4286 1.2 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
49 5zwb:A 271 43 0.2388 0.0590 0.3721 1.8 5zw9:A, 5zwa:A, 5zwa:B
50 3a01:A 78 57 0.2537 0.2179 0.2982 3.2 3a01:E
51 5e37:A 313 17 0.1194 0.0256 0.4706 4.2 5e37:C
52 1le8:A 53 29 0.1642 0.2075 0.3793 6.1 1akh:A, 1yrn:A
53 8bp1:A 231 34 0.1642 0.0476 0.3235 6.3 4ffd:A, 6q7n:A, 6q7o:A, 6q7p:A, 6q7r:A, 6z1k:A
54 8ddx:D 992 22 0.1493 0.0101 0.4545 6.3
55 8ddr:A 968 22 0.1493 0.0103 0.4545 6.4 8ddq:A, 8ddq:B, 8ddq:C, 8ddq:D, 8ddr:B, 8ddr:C, 8ddr:D, 8dds:A, 8dds:B, 8dds:C, 8dds:D, 8ddt:A, 8ddt:B, 8ddt:C, 8ddt:D, 8ddu:A, 8ddu:B, 8ddu:C, 8ddu:D, 8ddv:A, 8ddv:B, 8ddv:C, 8ddv:D, 8ddx:A, 8ddx:B, 8ddx:C, 8ed7:A, 8ed7:B, 8ed7:C, 8ed7:D, 8ed8:A, 8ed8:B, 8ed8:C, 8ed8:D, 8ed9:A, 8ed9:B, 8ed9:C, 8ed9:D
56 8si6:A 1107 23 0.1343 0.0081 0.3913 8.9 8si2:A, 8si2:B, 8si2:D, 8si2:C, 8si3:A, 8si3:B, 8si3:C, 8si3:D, 8si4:A, 8si4:B, 8si4:C, 8si4:D, 8si5:A, 8si5:B, 8si5:D, 8si5:C, 8si6:B, 8si6:C, 8si6:D, 8si7:A, 8si7:B, 8si7:D, 8si7:C, 8si8:A, 8si8:B, 8si8:D, 8si8:C, 8sia:A, 8sia:D, 8sia:B, 8sia:C, 8w2l:A, 8w2l:B, 8w2l:C, 8w2l:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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