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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMHFTIQREALLKPLQLVAGVVEQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEPGEITVPARKLMDICKS
LPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNG
GTLRSVATDGHRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPD
YERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQEEAEEEVQVEYNGGNLEIGFNVSY
LLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAYVVMPMRL

The query sequence (length=363) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6pth:A 369 367 0.9972 0.9810 0.9864 0.0 4tsz:A, 4tsz:B, 4tsz:C, 4tsz:D, 4tsz:E, 4tsz:F, 4tsz:G, 4tsz:H, 4tsz:I, 4tsz:J, 4tsz:K, 4tsz:L, 4tsz:M, 4tsz:N, 4tsz:O, 4tsz:P
2 6p81:A 440 367 0.5620 0.4636 0.5559 3.44e-138 7az5:A, 7az5:B, 7az5:C, 7az5:D, 7az6:A, 7az7:A, 7az8:A, 7az8:B, 7azc:A, 7azc:C, 7azc:B, 7azc:D, 7azd:A, 7azd:B, 7azd:D, 7azd:C, 7aze:A, 7aze:B, 7azf:A, 7azf:D, 7azf:B, 7azf:C, 7azg:A, 7azg:C, 7azg:B, 7azg:D, 7azg:E, 7azg:G, 7azg:F, 7azg:H, 7azk:A, 7azk:B, 7azk:C, 7azk:D, 7azl:A, 7azl:B, 7azl:C, 7azl:D, 3bep:B, 3bep:A, 8cix:A, 8ciy:A, 8ciz:A, 8ciz:B, 3d1e:A, 3d1f:A, 3d1f:B, 3d1g:A, 3d1g:B, 3f1v:A, 3f1v:B, 6fvl:A, 6fvl:B, 6fvl:C, 6fvl:D, 6fvm:A, 6fvm:B, 5jne:C, 5jne:G, 4k3k:A, 4k3k:B, 4k3l:A, 4k3l:B, 4k3m:A, 4k3m:B, 4k3o:A, 4k3o:B, 4k3p:A, 4k3q:A, 4k3q:B, 4k3r:A, 4k3s:A, 4k74:A, 4k74:B, 5m1s:C, 4mjp:B, 4mjq:A, 4mjq:B, 4mjr:A, 4mjr:B, 4n94:A, 4n94:B, 4n95:A, 4n96:A, 4n96:B, 4n97:A, 4n97:B, 4n98:A, 4n98:B, 4n99:A, 4n99:B, 4n9a:A, 4n9a:B, 1ok7:B, 4ovf:A, 4ovf:B, 4ovg:A, 4ovg:B, 4ovh:A, 8pat:A, 8pay:A, 4pnu:A, 4pnu:B, 4pnv:A, 4pnv:B, 4pnw:A, 4pnw:B, 3q4j:B, 3q4j:C, 3q4j:D, 3q4j:E, 3q4j:F, 3q4k:A, 3q4k:B, 3q4l:A, 3q4l:B, 3qsb:A, 3qsb:B, 3v62:A, 3v62:D, 8var:G
3 6ptr:B 372 372 0.4132 0.4032 0.4032 6.83e-88 6ptr:A
4 6dm6:A 378 383 0.3196 0.3069 0.3029 5.78e-50 6dm6:B, 6ptv:B, 6ptv:C
5 6djk:A 376 364 0.3085 0.2979 0.3077 1.44e-47
6 8dt6:C 381 360 0.2645 0.2520 0.2667 3.40e-42 8dt6:A, 8dt6:B, 8dt6:D
7 6dly:B 384 393 0.3085 0.2917 0.2850 2.91e-38 6dly:A
8 5ah2:C 382 383 0.3058 0.2906 0.2898 4.11e-36 5ah2:A, 5ah2:B, 5ah2:D, 5ah4:A, 5ah4:B
9 5agv:B 393 391 0.3003 0.2774 0.2788 4.39e-35 5agu:A, 5agu:B, 5agv:A, 6fvn:A, 6fvn:B, 6fvn:C, 6fvn:D, 6fvo:A, 6fvo:B, 6fvo:C, 6fvo:D
10 8djq:B 390 362 0.2948 0.2744 0.2956 5.55e-35 8dj6:A, 8dj6:B, 8dj6:C, 8dj6:D, 8djq:A, 8djq:C, 8djq:D, 8dk9:A, 8dk9:B, 8dk9:C, 8dk9:D
11 5fxt:A 374 360 0.2369 0.2299 0.2389 2.32e-23 5frq:A, 5frq:D, 5fve:A, 5g48:A, 5g48:B, 5g4q:B
12 6dj8:A 384 243 0.1488 0.1406 0.2222 8.88e-13 6dj8:B
13 4w8l:A 352 111 0.0854 0.0881 0.2793 0.19 4w8l:B, 4w8l:C
14 1ewq:A 759 92 0.0689 0.0329 0.2717 0.26 1ewq:B, 1fw6:A, 1fw6:B, 1nne:A, 1nne:B
15 7nhk:c 222 46 0.0468 0.0766 0.3696 0.97 7p7q:c, 7p7r:c, 7p7s:c, 7p7t:c, 7p7u:c
16 6kr4:C 575 97 0.0744 0.0470 0.2784 1.1
17 7vpg:A 341 66 0.0634 0.0674 0.3485 1.2 7f60:A, 7f60:B, 7f90:A, 7f90:C, 7vpg:C, 7vpg:E, 7vpg:G, 7vph:C, 7vph:E, 7vph:G, 7vph:A
18 4xcb:A 260 82 0.0689 0.0962 0.3049 2.5 4xca:A, 4xca:B, 4xca:C, 4xca:D, 4xcb:B, 4xcb:C, 4xcb:D, 4zpi:A, 4zpi:B, 4zpi:C, 4zpi:D
19 5dn6:A 505 48 0.0441 0.0317 0.3333 4.7 5dn6:B, 5dn6:C
20 3zg8:B 458 37 0.0413 0.0328 0.4054 6.3 3zg9:B, 3zga:B
21 1rxm:A 245 183 0.1102 0.1633 0.2186 8.9 1rxz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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