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BioLiP
>protein
HMGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH
NINRPLTMKKEGIQTRN

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4hca:A 99 96 0.9794 0.9596 0.9896 2.90e-67 4hc7:B
2 4hc7:A 108 108 1.0000 0.8981 0.8981 2.91e-66 3dfv:D, 3dfv:C, 3dfx:A, 3dfx:B, 4hc9:A
3 3vd6:C 96 95 0.8041 0.8125 0.8211 1.67e-48 2l6y:A, 2l6z:A, 3vek:C, 3vek:F, 1y0j:A
4 5o9b:A 68 50 0.4639 0.6618 0.9000 8.71e-28
5 5o9b:A 68 38 0.2268 0.3235 0.5789 2.70e-10
6 2gat:A 66 52 0.4330 0.6364 0.8077 1.10e-27 1gat:A, 1gau:A, 3gat:A
7 2gat:A 66 41 0.2268 0.3333 0.5366 1.23e-09 1gat:A, 1gau:A, 3gat:A
8 6zfv:A 63 43 0.4330 0.6667 0.9767 4.04e-27 1gnf:A
9 6zfv:A 63 43 0.2371 0.3651 0.5349 4.51e-11 1gnf:A
10 2m9w:A 63 52 0.4330 0.6667 0.8077 9.93e-27 8vg0:T, 8vg1:T
11 2m9w:A 63 42 0.2371 0.3651 0.5476 6.60e-11 8vg0:T, 8vg1:T
12 4gat:A 66 51 0.3093 0.4545 0.5882 2.85e-17 5gat:A, 6gat:A, 7gat:A, 2vus:I, 2vus:J, 2vus:K, 2vus:L, 2vus:M, 2vus:N, 2vus:O, 2vus:P, 2vut:I, 2vut:J, 2vut:K, 2vut:L, 2vut:M, 2vut:N, 2vut:O, 2vut:P, 2vuu:I, 2vuu:J, 2vuu:K, 2vuu:L, 2vuu:M, 2vuu:N, 2vuu:O, 2vuu:P
13 4gat:A 66 38 0.2268 0.3333 0.5789 2.78e-10 5gat:A, 6gat:A, 7gat:A, 2vus:I, 2vus:J, 2vus:K, 2vus:L, 2vus:M, 2vus:N, 2vus:O, 2vus:P, 2vut:I, 2vut:J, 2vut:K, 2vut:L, 2vut:M, 2vut:N, 2vut:O, 2vut:P, 2vuu:I, 2vuu:J, 2vuu:K, 2vuu:L, 2vuu:M, 2vuu:N, 2vuu:O, 2vuu:P
14 8j48:A 38 33 0.1959 0.5000 0.5758 2.96e-05 8j48:D
15 8j48:A 38 31 0.1753 0.4474 0.5484 9.25e-05 8j48:D
16 2kae:A 56 40 0.1649 0.2857 0.4000 3.95e-04
17 2kae:A 56 41 0.1649 0.2857 0.3902 0.007
18 6cnb:R 522 27 0.1340 0.0249 0.4815 0.14 8cen:O, 8ceo:O, 6cnc:R, 6cnd:R, 6cnf:R, 6eu0:Y, 6f40:U, 6f41:U, 6f42:U, 6f44:U, 8ffz:H, 5fmf:Q, 5fyw:O, 5fz5:O, 6gyk:O, 6gyl:O, 6gym:O, 7ml0:O, 7ml1:O, 7ml2:O, 7ml4:O, 1ngm:A, 1ngm:E, 1ngm:I, 1ngm:M, 1nh2:A, 7o4i:O, 7o4j:O, 7o72:O, 7o73:O, 7o75:O, 7oh9:K, 7oha:K, 7ohb:K, 5oqj:O, 5oqm:O, 7q5b:Y, 1rm1:A, 5sva:j, 4v1n:O, 4v1o:O, 1ytb:A, 1ytb:B, 1ytf:A, 7z7n:D, 7zb5:D, 7zb5:G, 7zs9:O, 7zsa:O, 7zsb:O
19 6eu0:Z 339 27 0.1340 0.0383 0.4815 0.15 6f40:V, 6f41:V, 6f42:V, 6f44:V, 7q5b:Z
20 2p57:A 124 45 0.1443 0.1129 0.3111 1.1
21 7ml4:M 234 28 0.1031 0.0427 0.3571 2.1 5fyw:M, 5fz5:M
22 2crw:A 149 44 0.1443 0.0940 0.3182 2.8
23 8cen:M 310 28 0.1031 0.0323 0.3571 3.1 8ceo:M, 5fmf:P, 6gyk:M, 6gyl:M, 6gym:M, 7ml0:M, 7ml1:M, 7ml2:M, 7o4i:M, 7o4j:M, 7o72:M, 7o73:M, 7o75:M, 5oqj:M, 5oqm:M, 7zs9:M, 7zsa:M, 7zsb:M
24 8s8h:l 134 38 0.1237 0.0896 0.3158 3.4 8cas:s, 6fyx:l, 6fyy:l, 6gsm:l, 6gsn:l, 3jap:l, 8s8i:l
25 4v1n:M 299 28 0.1031 0.0334 0.3571 3.6 4bbr:M, 4bbs:M, 4v1o:M
26 3k1f:M 185 28 0.1031 0.0541 0.3571 5.4
27 4psx:B 361 39 0.1340 0.0360 0.3333 8.8 4psx:E
28 2d74:B 137 26 0.1031 0.0730 0.3846 9.7 2dcu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218