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BioLiP
>protein
HMEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVSTQ

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3f21:A 67 60 0.9231 0.8955 1.0000 3.03e-38 2acj:B, 2acj:C, 2acj:D, 3f21:B, 3f21:C, 3f22:A, 3f22:B, 3f22:C, 3f23:A, 3f23:B, 3f23:C, 2gxb:A, 2gxb:B, 3irq:B, 3irq:A, 3irq:D, 3irq:C, 3irr:C, 3irr:D, 3irr:A, 3irr:B, 1qbj:A, 1qbj:B, 1qbj:C, 5zu1:C, 5zu1:A, 5zu1:B, 5zuo:B, 5zuo:C, 5zuo:D, 5zup:B, 5zup:C, 5zup:D
2 2acj:A 53 62 0.8154 1.0000 0.8548 5.24e-31 5zuo:A, 5zup:A
3 5zu1:D 47 61 0.7077 0.9787 0.7541 3.37e-24
4 7c0i:B 67 39 0.3538 0.3433 0.5897 1.49e-09 7c0i:A, 7c0i:C
5 4kmf:A 62 60 0.2769 0.2903 0.3000 3.95e-06
6 2heo:A 59 61 0.3077 0.3390 0.3279 1.19e-04 2heo:D, 1j75:A
7 1sfu:A 70 46 0.2769 0.2571 0.3913 1.20e-04 1sfu:B
8 7c0j:B 62 30 0.2769 0.2903 0.6000 4.22e-04 7c0j:A
9 4lb5:B 63 62 0.2923 0.3016 0.3065 0.009 4lb5:A, 4lb6:B
10 4ev0:D 214 33 0.1846 0.0561 0.3636 0.16 4ev0:A
11 1c3r:A 372 58 0.3077 0.0538 0.3448 1.2 1c3r:B, 1c3s:A
12 3byr:A 89 29 0.1692 0.1236 0.3793 2.0
13 3qph:A 335 40 0.1846 0.0358 0.3000 3.7 2f5t:X
14 6zj3:LT 190 28 0.1846 0.0632 0.4286 5.7
15 8ewy:A 1049 16 0.1385 0.0086 0.5625 8.8 6aah:A, 6aah:B, 6bbu:A, 6c7y:A, 6dbn:A, 5e1e:A, 5e1e:B, 4e4l:A, 4e4l:E, 4e4l:B, 4e4l:D, 4e4n:A, 4e4n:B, 4e5w:A, 4e5w:B, 4ehz:A, 4ehz:B, 4ehz:C, 4ehz:D, 4ei4:A, 4ei4:B, 6elr:A, 6elr:B, 8ewy:B, 3eyg:A, 3eyh:A, 4fk6:A, 4fk6:B, 6ggh:A, 6ggh:B, 5hx8:A, 5hx8:B, 6hzu:A, 6hzu:B, 4i5c:A, 4i5c:B, 4ivb:A, 4ivb:B, 4ivc:A, 4ivc:B, 4ivd:A, 4ivd:B, 4k6z:A, 4k77:A, 4k77:B, 5khw:A, 5khw:B, 5khx:A, 6n77:A, 6n77:B, 6n78:A, 6n79:A, 6n7a:A, 6n7a:B, 6n7b:A, 6n7c:A, 6n7c:B, 6n7d:A, 6rsb:A, 6rsb:B, 6rsc:A, 6rsc:B, 6rsd:A, 6rsd:B, 6rse:A, 6rse:B, 6rsh:A, 6rsh:B, 6sm8:A, 6sm8:B, 6smb:A, 6smb:B, 7t6f:A, 7t6f:B, 6tpe:A, 6tpe:B, 6tpf:A, 6tpf:B, 6w8l:A, 5wo4:A, 5wo4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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