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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMELVRVTEAGAMAAGRWVGRGDKEGGDGAAVDAMRELVNSVSMRGVVVIGEGEKDHAPMLYNGEEVGNGDGPECDFAVD
PIDGATLMSKGMTNAISVLAVADRGTMFDPSAVFYMNKIAVGPDAAHVLDITAPISENIRAVAKVKDLSVRDMTVCILDR
PRHAQLIHDVRATGARIRLITDGDVAGAISACRPHSGTDLLAGIGGTPEGIIAAAAIRCMGGAIQAQLAPRDDAERRKAL
EAGYDLNQVLTTEDLVSGENVFFCATGVTDGDLLKGVRYYPGGCTTHSIVMRSKSGTVRMIEAYHRLSKLN

The query sequence (length=311) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ayu:A 319 311 0.9968 0.9718 0.9968 0.0 6ayu:B, 6ayv:A, 6ayv:B, 7txb:B, 7txb:A
2 8g5w:A 328 314 0.4759 0.4512 0.4713 5.20e-87 8g5w:B, 8g5w:C, 8g5x:A, 8g5x:B, 8g5x:C, 7js3:A, 7js3:B, 7js3:C, 7txa:A, 7txa:B, 7txa:C, 7txa:D, 7txa:Q, 7txa:U, 7txa:W, 7txa:1, 7txg:A, 7txg:B, 7txg:C, 7txg:D
3 3rpl:B 349 329 0.4309 0.3840 0.4073 1.06e-81 3roj:A, 3roj:B, 3roj:C, 3roj:D, 3rpl:A, 3rpl:C, 3rpl:D
4 3big:A 321 317 0.4373 0.4237 0.4290 9.63e-81 3d1r:A, 2r8t:A
5 5a5l:A 338 332 0.4469 0.4112 0.4187 5.80e-78
6 3ojy:B 504 136 0.1125 0.0694 0.2574 0.54 8b0f:D
7 7nyc:D 487 136 0.1125 0.0719 0.2574 0.54 7nyd:D
8 2b25:A 254 139 0.1158 0.1417 0.2590 0.98 2b25:B
9 4u1w:A 731 133 0.1029 0.0438 0.2406 1.3 4u1y:A
10 5uqr:A 439 127 0.0965 0.0683 0.2362 2.7 6bol:A, 6bon:B, 6boo:B, 6boo:A, 6boo:D, 5uqr:B, 5uqu:A, 5uqu:B
11 4xbr:A 316 129 0.1125 0.1108 0.2713 5.1 8ahg:A, 8ahh:A, 8ahi:A, 4app:A, 5bms:A, 2cdz:A, 7cmb:A, 7cp3:A, 7cp4:A, 4fie:A, 4fie:B, 4fif:A, 4fif:B, 4fig:A, 4fig:B, 4fii:A, 5i0b:A, 4jdh:A, 4jdi:A, 4jdj:A, 4jdk:A, 4l67:A, 4njd:A, 4o0v:A, 4o0x:A, 4o0y:A, 2q0n:A, 7s46:A, 7s47:A, 7s48:A, 5upk:B, 5ved:A, 5vee:A, 5vef:A, 6wlx:A, 6wly:A, 2x4z:A, 4xbu:A, 5xva:A, 5xvf:A, 5xvg:A, 5zjw:A
12 5kbt:A 973 80 0.0772 0.0247 0.3000 5.1 5kbu:A, 5kbu:C, 4u5c:D, 4uqj:A, 4uqj:B, 4uqj:C, 4uqj:D, 6xsr:A
13 7rza:A 981 80 0.0772 0.0245 0.3000 5.1 7ryz:A, 7ryz:C, 7rza:C, 5wek:A, 5wek:C, 5wel:A, 5wel:C, 5wen:A, 5wen:C
14 5weo:A 988 80 0.0772 0.0243 0.3000 5.1 6dlz:A, 6dlz:D, 6dlz:B, 6dlz:C, 6dm0:A, 6dm0:D, 6dm0:B, 6dm0:C, 6dm1:A, 6dm1:D, 6dm1:B, 6dm1:C, 6o9g:A, 6o9g:D, 6o9g:B, 6o9g:C, 7ocf:A, 7ocf:C, 7tnj:A, 7tnj:B, 7tnj:C, 7tnj:D, 7tnk:A, 7tnk:D, 7tnk:B, 7tnk:C, 7tnl:A, 7tnl:D, 7tnl:B, 7tnl:C, 7tnm:A, 7tnm:D, 7tnm:B, 7tnm:C, 7tnn:A, 7tnn:D, 7tnn:B, 7tnn:C, 7tno:A, 7tno:D, 7tno:B, 7tno:C, 7tnp:A, 7tnp:D, 7tnp:B, 7tnp:C, 5weo:D, 5weo:B, 5weo:C
15 7rz4:A 993 80 0.0772 0.0242 0.3000 5.1 8ayl:B, 8ayl:A, 8ayl:C, 8ayl:D, 8aym:D, 8aym:B, 8ayn:B, 8ayn:C, 8ayn:A, 8ayn:D, 8ayo:A, 8ayo:D, 8ayo:C, 8ayo:B, 8c1p:A, 8c1p:B, 8c1p:C, 8c1p:D, 8c1q:A, 8c1q:B, 8c1q:C, 8c1q:D, 8c1r:A, 8c1r:B, 8c1r:C, 8c1r:D, 5kbs:A, 5kbs:B, 5kbs:C, 5kbs:D, 5kbt:B, 5kbt:C, 5kbt:D, 5kbu:B, 5kbu:D, 5kbv:A, 5kbv:B, 5kbv:C, 5kbv:D, 3kg2:A, 3kg2:B, 3kg2:C, 3kg2:D, 5l1e:A, 5l1e:B, 5l1e:C, 5l1e:D, 5l1f:A, 5l1f:B, 5l1f:C, 5l1f:D, 5l1g:A, 5l1g:C, 5l1g:D, 5l1g:B, 5l1h:A, 5l1h:B, 5l1h:C, 5l1h:D, 7ldd:B, 7ldd:D, 7lde:B, 7lde:D, 7lep:B, 7lep:D, 6njl:B, 6njl:D, 6njm:B, 6njm:D, 6njn:B, 6njn:D, 7oca:B, 7oca:D, 7ocd:A, 7ocd:C, 7ocd:D, 7ocd:B, 7oce:B, 7oce:D, 7ocf:B, 7ocf:D, 7qhb:A, 7qhb:B, 7qhb:C, 7qhb:D, 7qhh:A, 7qhh:B, 7qhh:C, 7qhh:D, 6qkc:A, 6qkc:B, 6qkc:C, 6qkc:D, 6qkz:B, 6qkz:D, 6ruq:A, 6ruq:B, 6ruq:C, 6ruq:D, 7ryy:A, 7ryy:B, 7ryy:C, 7ryy:D, 7ryz:B, 7ryz:D, 7rz4:B, 7rz4:C, 7rz4:D, 7rz5:A, 7rz5:B, 7rz5:C, 7rz5:D, 7rz6:A, 7rz6:B, 7rz6:C, 7rz6:D, 7rz7:A, 7rz7:B, 7rz7:C, 7rz7:D, 7rz8:A, 7rz8:B, 7rz8:C, 7rz8:D, 7rza:B, 7rza:D, 8ss2:A, 8ss2:B, 8ss2:C, 8ss2:D, 8ss3:A, 8ss3:B, 8ss3:C, 8ss3:D, 8ss4:A, 8ss6:A, 8ss6:B, 8ss6:C, 8ss6:D, 8ss7:A, 8ss7:B, 8ss7:C, 8ss7:D, 8ss8:A, 8ss8:B, 8ss8:C, 8ss8:D, 8ss9:A, 8ss9:B, 8ss9:C, 8ss9:D, 8ssa:A, 8ssa:B, 8ssa:C, 8ssa:D, 8ssb:A, 8ssb:B, 8ssb:C, 8ssb:D, 4u4f:A, 4u4f:B, 4u4f:C, 4u4f:D, 4u4g:A, 4u4g:B, 4u4g:C, 4u4g:D, 5vhw:A, 5vhw:B, 5vhw:C, 5vhw:D, 5vhx:A, 5vhx:B, 5vhx:C, 5vhx:D, 5vhy:A, 5vhy:B, 5vhy:C, 5vhy:D, 5vhz:A, 5vhz:B, 5vhz:C, 5vhz:D, 8vj6:A, 8vj6:B, 8vj6:C, 8vj6:D, 8vj7:A, 8vj7:B, 8vj7:C, 8vj7:D, 5wek:B, 5wek:D, 5wel:B, 5wel:D, 6xsr:D, 6xsr:B, 6xsr:C
16 4lms:C 68 57 0.0675 0.3088 0.3684 6.4
17 3ond:B 488 32 0.0482 0.0307 0.4688 7.9 3ond:A, 3one:A, 3one:B, 3onf:A, 3onf:B
18 6gng:B 526 41 0.0547 0.0323 0.4146 8.8 6gng:A
19 4wlc:A 536 47 0.0450 0.0261 0.2979 9.6 4xb3:A, 2zic:A, 2zid:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218