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BioLiP
>protein
HMASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFPRPKRVCKDPPYKVEESGYA
GFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCEKLTFNNPTEDFRRKLLKA

The query sequence (length=139) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ndf:A 141 139 1.0000 0.9858 1.0000 5.29e-102 7eic:A, 7eic:B, 7eid:A, 7eid:B, 5hjb:A, 5hjd:G, 5hjd:K, 5hjd:A, 5hjd:C, 5hjd:E, 5hjd:T, 5hjd:Q, 5hjd:N, 6l5z:A, 6ls6:A, 6ls6:B, 6mil:A, 6mil:C, 6mim:A, 6mim:C, 2ndg:A, 8pj7:A, 4tmp:A, 4tmp:C, 7vkg:A, 7vkh:A, 7vkh:B, 5yyf:A, 5yyf:C
2 5j9s:A 150 134 0.8058 0.7467 0.8358 2.22e-82 7b0t:A, 7b10:A, 7e74:A, 7e74:D, 7e74:C, 7e74:B, 7e7c:A, 6hpw:A, 6hpx:A, 6hpy:A, 6hpz:A, 6ht0:A, 6ht1:A, 8pji:A, 6t1i:A, 6t1j:A, 6t1l:A, 6t1m:A, 6t1n:A, 6t1o:A, 7x88:A, 7x8b:A, 7x8b:C, 7x8f:A, 7x8f:C, 7x8g:A, 7x8g:C
3 6axj:A 143 109 0.2806 0.2727 0.3578 4.68e-21 6axj:B, 6axj:D, 6axj:C, 5wyi:B, 5wyi:C
4 8jg4:B 154 136 0.3022 0.2727 0.3088 2.57e-15 8jg4:A
5 8iiy:A 506 59 0.1655 0.0455 0.3898 1.45e-10 8dkb:A, 8dkb:B, 8dkb:C, 8dkb:D, 8dkb:E, 8dkb:F, 8dkb:G, 8dkb:H, 8i60:C, 8i60:D, 8iiz:A, 8ij0:A, 8ij0:B, 7jfy:B, 7jfy:A, 7jfy:C, 7jfy:D, 5r68:B, 5r68:A, 5r69:B, 5r69:A, 5vnb:A, 5vnb:B, 5vnb:D, 5xtz:A, 5y8v:D
6 5iok:A 142 57 0.1655 0.1620 0.4035 1.56e-10 5d7e:A, 7f4a:A, 6min:A, 6mio:A, 6miq:A
7 6lsd:B 135 102 0.2374 0.2444 0.3235 3.24e-10 5iql:A, 6lsd:A, 5xnv:A
8 8x1c:W 187 59 0.1655 0.1230 0.3898 3.47e-10
9 7f5m:A 139 42 0.1223 0.1223 0.4048 1.99e-05 7f5m:B
10 6dht:A 547 49 0.1151 0.0293 0.3265 1.8
11 5nld:B 138 51 0.1007 0.1014 0.2745 4.9 5nle:A, 5nle:B, 5nle:C, 5nle:D, 5nlh:A, 5nm1:A, 5nm1:B, 5nm1:C, 5nm1:D, 5nmj:A, 7p8h:C, 7p8h:A
12 2kg1:A 105 40 0.0935 0.1238 0.3250 5.5
13 7sva:A 792 21 0.0863 0.0152 0.5714 6.5 7swf:A, 7swq:A
14 3zdr:A 403 85 0.1655 0.0571 0.2706 8.5
15 4e8c:A 594 35 0.0791 0.0185 0.3143 9.2 4e8c:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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