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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTDEYLSKLVPDGIKFKHDKFINSHFNVLRGIHGDVKTYKLVTCV
YGEVHQVVVDCRKDSPTYLKWEKFIISYKNQQLILLPPNMGNSHYVSSAAAVYYYKLAYEGEYMDAPDQFTYAWNDERIG
IDWPTNTPILSDRDILAT

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7m15:D 181 177 0.9944 0.9779 1.0000 2.39e-133 7an4:A, 7an4:B, 7an4:D, 7m14:A, 7m14:B, 7m14:C, 7m14:D, 7m14:E, 7m14:F, 7m15:A, 7m15:B, 7m15:C, 7m15:E, 7m15:F
2 8dco:B 181 176 0.8876 0.8729 0.8977 4.52e-120 8db5:A, 8db5:B, 8db5:C, 8db5:D, 8db5:E, 8db5:F, 8db5:G, 8db5:H, 8dco:A
3 8dcl:A 185 176 0.7921 0.7622 0.8011 1.64e-107 7anj:A, 7anj:B, 8dak:A, 8dak:B, 8dcl:B
4 1dzt:A 183 165 0.3146 0.3060 0.3394 3.37e-25 1dzt:B
5 6ndr:A 188 162 0.2978 0.2819 0.3272 7.49e-20 6ndr:B
6 3ryk:A 175 174 0.2753 0.2800 0.2816 1.40e-18 3ryk:B
7 6c46:A 183 166 0.2921 0.2842 0.3133 1.83e-18 6c46:D
8 2ixh:A 184 161 0.2640 0.2554 0.2919 3.66e-18 2ixh:B, 2ixi:B, 2ixi:A, 2ixk:A, 2ixk:B
9 7pvi:AAA 199 177 0.2865 0.2563 0.2881 3.22e-15 7pvi:BBB, 7pwb:AAA, 7pwb:BBB
10 1epz:A 183 168 0.2865 0.2787 0.3036 3.15e-14
11 2ixc:A 198 170 0.2584 0.2323 0.2706 2.64e-13 2ixc:B, 2ixc:C, 2ixc:D
12 5buv:A 174 167 0.2753 0.2816 0.2934 3.00e-11 5buv:B
13 1oi6:A 202 177 0.2753 0.2426 0.2768 2.21e-10 1oi6:B
14 7pwh:AAA 203 165 0.2697 0.2365 0.2909 5.25e-09
15 4hn1:C 201 167 0.2416 0.2139 0.2575 2.09e-06 4hmz:A, 4hmz:B, 4hmz:C, 4hmz:D, 4hn1:A, 4hn1:B, 4hn1:D
16 1vli:A 358 114 0.1461 0.0726 0.2281 0.76
17 8bf8:A 302 61 0.0955 0.0563 0.2787 0.85
18 7cp7:A 430 87 0.1236 0.0512 0.2529 1.2 7cp6:A, 7cp6:B
19 8h1j:A 362 61 0.0955 0.0470 0.2787 1.9 8ex9:A, 8exa:A
20 8auv:C 117 66 0.1124 0.1709 0.3030 2.7 8b2l:C1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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