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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQ
YIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANILPYLRTWFRTRSAIILHLSNGSVQINFFQDHTKLI
LCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLS

The query sequence (length=210) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4o56:A 244 220 1.0000 0.8607 0.9545 1.68e-155 6ax4:A, 3bzi:A, 3c5l:A, 8crc:A, 4dfw:A, 5dms:A, 5dms:C, 5dmv:C, 5dnj:A, 4e67:A, 4e9c:A, 4e9d:A, 3fvh:A, 6gy2:B, 6gy2:A, 4h71:A, 4hab:A, 4hab:B, 4hab:C, 4hco:A, 3hik:A, 4hy2:A, 5j19:B, 5j19:A, 8joq:A, 8joy:A, 4lkl:A, 4lkm:A, 4lkm:C, 7mso:A, 7mso:B, 7mx1:A, 7mx1:B, 5nei:A, 5nfu:A, 5nje:A, 5nmm:A, 5nn2:A, 4o6w:A, 4o9w:A, 2ojx:A, 3p2z:A, 3p34:A, 3p35:A, 3p35:B, 3p36:A, 3p37:A, 3p37:B, 3p37:C, 3q1i:A, 1q4k:A, 1q4k:B, 1q4k:C, 4rcp:A, 3rq7:A, 8s30:A, 8s31:A, 8s31:B, 1umw:A, 1umw:B, 8wfp:A, 8wfp:B, 4whh:A, 4whk:A, 4whl:A, 5x3s:B, 5x3s:A, 4x9r:A, 4x9v:A, 4x9w:A
2 6mf5:B 262 160 0.2429 0.1947 0.3187 4.53e-21 6mf4:A, 6mf5:A, 6mf6:B, 6mf6:A
3 8tpm:B 615 128 0.1476 0.0504 0.2422 0.10 8tpm:A, 8tpo:B, 8tpo:A, 8tpp:A, 8tpp:B, 8tpr:A, 8tpr:B
4 6qm5:A 673 72 0.0905 0.0282 0.2639 0.31 6qm5:B, 6qm9:A, 6qm9:B, 6qma:A, 6qma:B, 6qmb:A, 6qmb:B, 8toi:A, 8toi:B, 8tok:A, 8tok:B, 8tol:A, 8tol:B, 4wis:A, 4wis:B, 4wit:A, 4wit:B
5 6ogz:A 1082 75 0.1048 0.0203 0.2933 0.52 6ogy:A, 6oj6:P, 2r7r:A, 2r7s:A, 2r7t:A, 2r7u:A, 2r7v:A, 2r7w:A, 2r7x:A, 2r7x:B
6 8hz4:A 456 97 0.1143 0.0526 0.2474 0.84 8hz4:B, 8hz4:C, 8hz4:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218