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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HLPKVAQSFLNLLCAQTSLTFSIVVLDEHEVVPVARSYLPQQDNRVSPYGMHLGNRLPAHATSTGKVLLSVLDREVQIEW
IEKYGLKRLTPYTITDEHTFLETLDAVRQSDYCLSTEEHELGVIAIAVPVLNAQGLTIAALNCMSQTNRVQPQYLIDQVL
PLLRNTANELRNLV

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5hpf:A 175 174 1.0000 0.9943 1.0000 1.73e-128 5hpf:C, 5hpi:A, 5hpi:B, 5hpi:C, 5hpi:D
2 8eju:B 257 165 0.2931 0.1984 0.3091 1.10e-20 8eju:A
3 1mkm:A 246 167 0.2356 0.1667 0.2455 1.96e-11
4 2o99:C 182 148 0.2069 0.1978 0.2432 5.63e-08 2o99:A, 2o99:B, 2o99:D, 2o9a:A, 2o9a:B, 2o9a:C, 2o9a:D
5 2xro:B 240 76 0.1609 0.1167 0.3684 0.028 2xro:A, 2xro:E, 2xro:F
6 5whm:A 263 113 0.1494 0.0989 0.2301 0.34
7 3ppo:A 272 78 0.1149 0.0735 0.2564 2.0 3ppo:B, 3ppq:A, 3ppq:B, 3ppr:A, 3ppr:B
8 8qnc:A 486 79 0.1264 0.0453 0.2785 5.9 8qmy:A, 8qmy:B, 8qmy:C, 8qnb:A, 8qnr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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