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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HLNTNPKTNLRLWVAFQMMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIDENPAPAPNITG

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vb9:c 68 60 0.9667 0.8529 0.9667 2.08e-37 7f0l:X, 7pil:X, 7pqd:X, 7pqd:x, 7va9:C, 7va9:c, 7vb9:C, 7vnm:X, 7vny:X, 7vor:X, 7vor:x, 7vot:X, 7vot:x, 7vy2:X, 7vy2:x, 7vy3:X
2 5eiy:B 658 32 0.2500 0.0228 0.4688 0.055 5ej1:B, 5ejz:B, 4hg6:B, 4p00:B, 4p02:B
3 7r81:U1 173 17 0.1500 0.0520 0.5294 0.62
4 6p5i:AS 176 16 0.1500 0.0511 0.5625 1.5 6p5j:AS, 6p5k:AS, 6p5n:AS, 7zjw:LV, 7zjx:LV
5 1ylh:A 524 50 0.2500 0.0286 0.3000 1.6
6 8i9p:LS 174 17 0.1500 0.0517 0.5294 1.8 8i9r:LS, 8i9t:LS, 8i9v:LS, 8i9w:LS, 8i9x:LS, 8i9y:LS, 8i9z:LS, 8ia0:LS, 7olc:LS, 7old:LS, 8oo0:LS, 8pv1:LS, 8pv2:LS, 8pv3:LS, 8pv4:LS, 8pv5:LS, 8pv6:LS, 8pv7:LS, 8pv8:LS, 8pvk:LS, 8pvl:LS, 7z3n:LS, 7z3o:LS
7 3nj3:A 327 20 0.1667 0.0306 0.5000 2.9 3nj3:B, 1vbr:A, 1vbr:B
8 8yfq:R 746 18 0.1167 0.0094 0.3889 3.2
9 5nbp:A 237 14 0.1667 0.0422 0.7143 6.4 7kr6:AAA, 7kr6:BBB, 5nbp:B, 6vho:AAA
10 8a3w:R 178 19 0.1333 0.0449 0.4211 8.9 8a98:R, 6az3:R, 3jcs:R, 8ovj:R, 8rxh:LR, 8rxx:LR, 5t2a:Q
11 1os1:A 537 50 0.2333 0.0261 0.2800 9.4 1aq2:A, 6asi:A, 6asm:A, 6asn:A, 6at2:A, 6at3:A, 6at3:B, 6at4:A, 6at4:B, 1ayl:A, 6com:A, 6crt:A, 1k3c:A, 1k3d:A, 2olq:A, 2olr:A, 2pxz:X, 2py7:X, 6v2l:A, 6v2m:A, 6v2n:A
12 1xl8:B 600 27 0.1667 0.0167 0.3704 9.6 1xl8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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