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BioLiP
>protein
HLGPQFCKSCWFENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL

The query sequence (length=51) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2m1s:A 99 51 1.0000 0.5152 1.0000 1.37e-33 7ckl:B, 7ela:B, 5i72:A, 5i72:B
2 7x6v:B 48 48 0.6275 0.6667 0.6667 1.55e-17
3 7ckm:B 49 47 0.4706 0.4898 0.5106 1.38e-10 7el9:B, 7el9:E, 7elb:B, 7elb:D, 7elc:B, 7vgq:B, 7vh1:B
4 6f98:A 78 25 0.2157 0.1410 0.4400 0.47
5 2ff0:A 102 47 0.2941 0.1471 0.3191 0.71 2a66:A, 5l0m:A, 8pki:K
6 6wi7:A 206 45 0.2745 0.0680 0.3111 0.86 2ckl:A, 8grm:M, 2h0d:A, 7nd1:H, 8pp7:K, 8pp7:M, 4r8p:K, 4r8p:M, 3rpg:B, 6wi8:A, 6wi8:B
7 2csy:A 81 35 0.2353 0.1481 0.3429 0.93
8 7oik:A 4426 31 0.2353 0.0027 0.3871 1.2 7oim:A, 6tax:A, 6tay:A
9 2djb:A 72 41 0.2549 0.1806 0.3171 1.4
10 7r70:A 150 29 0.2157 0.0733 0.3793 1.4 5d0i:A, 5d0i:B, 5d0k:C, 5d0k:F, 5d0k:I, 5d0k:L, 7r70:B, 7r71:A
11 6zu5:SDD 59 28 0.1961 0.1695 0.3571 2.0
12 7dvq:M 191 32 0.1961 0.0524 0.3125 2.3 8i0r:K, 8i0s:K, 8i0t:K, 5z56:M, 5z58:M
13 2ecw:A 85 34 0.2745 0.1647 0.4118 3.0
14 6ff4:t 172 32 0.1961 0.0581 0.3125 3.3 8ch6:Z, 6ff7:t, 7qtt:Z
15 4abo:I 117 33 0.2353 0.1026 0.3636 3.4
16 1chc:A 68 25 0.1765 0.1324 0.3600 3.6
17 2l0b:A 91 30 0.1961 0.1099 0.3333 4.1
18 1cyg:A 680 22 0.1765 0.0132 0.4091 5.8
19 7u2s:A 248 27 0.1961 0.0403 0.3704 6.1 7u2s:B
20 6l8n:A 810 37 0.2353 0.0148 0.3243 6.4
21 7oni:R 86 29 0.1765 0.1047 0.3103 7.3 2ecl:A, 6v9i:R
22 6ct6:B 331 25 0.1961 0.0302 0.4000 9.3 6ct6:A
23 1bor:A 56 26 0.2157 0.1964 0.4231 9.5 2mwx:A, 5yuf:A, 5yuf:B, 5yuf:C, 5yuf:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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