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BioLiP
>protein
HLGPQFCKSCWAENKGLVECNNHYLCLNCLTLLLGVSSRCPICKMPLPT

The query sequence (length=49) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2m1s:A 99 49 0.9388 0.4646 0.9388 9.13e-22 7ckl:B, 7ela:B, 5i72:A, 5i72:B
2 7x6v:B 48 48 0.6327 0.6458 0.6458 3.14e-17
3 7ckm:B 49 47 0.4694 0.4694 0.4894 1.73e-09 7el9:B, 7el9:E, 7elb:B, 7elb:D, 7elc:B, 7vgq:B, 7vh1:B
4 2ff0:A 102 47 0.3061 0.1471 0.3191 0.27 2a66:A, 5l0m:A, 8pki:K
5 6f98:A 78 25 0.2245 0.1410 0.4400 0.54
6 6wi7:A 206 45 0.2857 0.0680 0.3111 2.2 2ckl:A, 8grm:M, 2h0d:A, 7nd1:H, 8pp7:K, 8pp7:M, 4r8p:K, 4r8p:M, 3rpg:B, 6wi8:A, 6wi8:B
7 4xgc:C 567 33 0.2653 0.0229 0.3939 2.5
8 7r70:A 150 21 0.1633 0.0533 0.3810 2.7 5d0i:A, 5d0i:B, 5d0k:C, 5d0k:F, 5d0k:I, 5d0k:L, 7r70:B, 7r71:A
9 1chc:A 68 25 0.1837 0.1324 0.3600 2.8
10 7oik:A 4426 50 0.3469 0.0038 0.3400 3.1 7oim:A, 6tax:A, 6tay:A
11 1bor:A 56 44 0.3673 0.3214 0.4091 3.3 2mwx:A, 5yuf:A, 5yuf:B, 5yuf:C, 5yuf:D
12 7jgs:C 614 33 0.2653 0.0212 0.3939 3.7 7jgr:C, 7jk2:C, 7jk3:C, 7jk4:C, 7jk5:C, 7jk6:C
13 6y2n:A 306 18 0.1837 0.0294 0.5000 4.8
14 2csy:A 81 34 0.2245 0.1358 0.3235 6.3
15 6l8n:A 810 37 0.2449 0.0148 0.3243 7.0
16 1iym:A 55 26 0.1633 0.1455 0.3077 9.1
17 4ond:A 72 47 0.3061 0.2083 0.3191 9.5 4ond:B, 4ond:E, 4ond:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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