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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HKNICIYGGSFDPITYAHEMVLDKISNLNWIHEIWVVICRCRNDKSLTEFHHRHNMFTIIINNSSKIIKSKIFLKDLESH
SEMTPTYDLLKTQKELHPNYTFYFGLGSDLICDIFSWDEGEKLVLENAFIIIERGHFKIDESILKKFPKYYLINIPKLSF
INFISSSEARKFLTKENDINDIKKYIHPLTIDYIIKYNLYDFNLE

The query sequence (length=205) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5llt:A 205 205 1.0000 1.0000 1.0000 5.81e-150 5llt:B, 5lm3:A
2 5das:A 198 208 0.2585 0.2677 0.2548 2.89e-14 6buv:B, 4s1o:A, 4ybr:A, 4ybr:B
3 4ymi:B 198 206 0.2293 0.2374 0.2282 5.31e-11 5db4:A, 5deo:A, 5deo:B, 5deo:C, 5deo:D, 5vir:A, 5vir:B, 4ymi:A
4 5das:C 180 204 0.2439 0.2778 0.2451 1.17e-10 5das:B, 5das:D, 4s1o:B
5 1kaq:A 186 142 0.1756 0.1935 0.2535 8.55e-09 1kaq:B, 1kaq:C, 1kaq:D, 1kaq:E, 1kaq:F
6 5db4:B 175 200 0.2098 0.2457 0.2150 1.33e-07
7 8aih:A 184 203 0.2293 0.2554 0.2315 6.38e-07 8aii:A, 9fyb:A, 9fyb:B
8 3e27:C 189 141 0.1610 0.1746 0.2340 9.73e-07 3e27:A, 3e27:B, 3e27:D, 3hfj:A, 3hfj:B, 3mla:A, 3mla:B, 3mlb:A, 3mlb:B, 3mmx:B, 3mmx:C, 3mmx:A, 3mmx:D, 2qtn:B, 2qtr:A, 2qtr:B, 2qtr:C
9 2h2a:A 189 136 0.1659 0.1799 0.2500 8.76e-06 2h29:A, 2h29:B, 2h2a:B
10 1k4m:A 213 133 0.1366 0.1315 0.2105 4.63e-05 1k4m:B, 1k4m:C
11 5ts2:A 165 116 0.1366 0.1697 0.2414 0.023 4ruk:A, 4ruk:F, 4ruk:B, 4ruk:E, 4ruk:C, 4ruk:D, 5ts2:B, 5ts2:C, 5ts2:D, 5ts2:E, 5ts2:F, 3x1j:A, 3x1j:C, 3x1j:B, 3x1k:A, 3x1k:B, 3x1k:C, 3x1k:D, 3x1k:E, 3x1k:F, 3x1m:A, 3x1m:C, 3x1m:B
12 6c48:D 87 62 0.0829 0.1954 0.2742 0.21 6c48:A
13 7zpk:C 233 30 0.0732 0.0644 0.5000 0.29 3adl:A, 5n8l:A, 5n8m:A
14 3k9w:A 163 121 0.1073 0.1350 0.1818 0.31 3pxu:A
15 4nah:C 160 55 0.0829 0.1062 0.3091 0.34 3f3m:A, 4nah:A, 4nah:B, 4nah:D, 4nah:E, 4nah:F, 4nat:A, 4nat:B, 4nat:C, 4nau:A, 4nau:B, 4nau:C
16 6a6d:A 163 118 0.1317 0.1656 0.2288 0.77 6a75:A, 6a7d:A, 8i8p:A, 6j3m:A, 6jnh:A, 6jog:A, 6kkw:A, 5yh7:A, 5yrr:A, 5zzc:A
17 3hm7:B 437 53 0.0780 0.0366 0.3019 0.99 3hm7:A, 3hm7:C, 3hm7:D, 3hm7:E, 3hm7:F
18 1vlh:B 158 59 0.0683 0.0886 0.2373 1.4 1vlh:A, 1vlh:F, 1vlh:C, 1vlh:D, 1vlh:E
19 6gyf:B 366 45 0.0732 0.0410 0.3333 2.0 6gye:A, 6gye:B, 6gyf:A, 6gzo:A, 6gzo:B
20 1o6b:A 163 51 0.0634 0.0798 0.2549 2.7
21 3n2c:A 408 80 0.0780 0.0392 0.2000 2.8 3feq:A, 3feq:B, 3feq:C, 3feq:D, 3feq:E, 3feq:F, 3feq:G, 3feq:H, 3feq:I, 3feq:J, 3feq:K, 3feq:L, 3feq:M, 3feq:N, 3feq:O, 3feq:P, 3n2c:B, 3n2c:C, 3n2c:D, 3n2c:E, 3n2c:F, 3n2c:G, 3n2c:H, 3n2c:I, 3n2c:J, 3n2c:K, 3n2c:L, 3n2c:M, 3n2c:N, 3n2c:O, 3n2c:P
22 1od6:A 155 24 0.0537 0.0710 0.4583 3.2
23 4f3r:B 149 23 0.0488 0.0671 0.4348 3.9
24 8w6v:A 494 156 0.1512 0.0628 0.1987 5.7 8w6v:B, 8w71:A, 8w71:B
25 7v00:F 695 53 0.0683 0.0201 0.2642 5.9 7v01:F
26 7v02:F 650 53 0.0683 0.0215 0.2642 6.4
27 9iye:B 173 115 0.1073 0.1272 0.1913 6.7 8i8j:A, 8i8j:B, 8i8j:C, 8i8j:D, 8i8j:E, 8i8j:F, 8i8k:A, 8i8k:B, 8i8k:C, 8i8k:D, 8i8k:E, 8i8k:F, 8i8l:A, 8i8l:B, 8i8l:C, 8i8l:D, 8i8l:E, 8i8l:F, 8i8m:A, 8i8m:B, 8i8m:C, 8i8m:D, 8i8m:E, 8i8m:F, 8i8n:A, 8i8n:B, 8i8n:C, 8i8n:D, 8i8n:E, 8i8n:F, 8i8o:A, 8i8o:B, 8i8o:C, 8i8o:D, 8i8o:E, 8i8o:F, 9iye:A, 9iye:C, 9iye:D, 9iye:E, 9iye:F, 9iyf:A, 9iyf:B, 9iyf:C, 9iyf:D, 9iyf:E, 9iyf:F, 9iyh:A, 9iyh:B, 9iyh:C, 9iyh:D, 9iyh:E, 9iyh:F, 8zn2:A, 8zn2:B, 8zn2:C, 8zn2:D, 8zn2:E, 8zn2:F, 8zn3:A, 8zn3:B, 8zn3:C, 8zn3:D, 8zn3:E, 8zn3:F
28 3nd6:A 152 27 0.0439 0.0592 0.3333 8.1 3nd6:B, 3nd6:C, 3nd6:D, 3nd6:E, 3nd6:F, 3nd7:A, 3nd7:B, 3nd7:C, 3nd7:D, 3nd7:E, 3nd7:F
29 6j1m:A 381 58 0.0927 0.0499 0.3276 8.4 6j1m:B, 6j1n:A, 6j1n:B
30 3otw:A 157 27 0.0537 0.0701 0.4074 9.2 3otw:D, 3otw:B, 3otw:C, 3otw:E, 3otw:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218