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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HIRIANRKRVEMFVAKRFHLPTRLATAAPDIAAEWHDELNPMHMYPAIIGIGHVQPVWWKCAICSHSYQMSVEKRVVRGG
GCPQCVVNGKRAV

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sga:Fd 96 93 1.0000 0.9688 1.0000 4.23e-67 7pua:Fd, 6sgb:Fd
2 6yxx:E2 369 63 0.2366 0.0596 0.3492 0.001
3 6yxx:E2 369 82 0.2151 0.0542 0.2439 2.2
4 8gyj:B 428 53 0.2043 0.0444 0.3585 0.044 8gyi:A, 8gyi:B, 8gyj:A
5 7aor:at 242 29 0.1290 0.0496 0.4138 0.10
6 7aor:at 242 72 0.2043 0.0785 0.2639 0.24
7 7ane:at 204 29 0.1183 0.0539 0.3793 0.15
8 7pub:DS 243 29 0.1183 0.0453 0.3793 0.22 6hiv:DS, 6hiw:DS, 6hiy:DS
9 1gn9:A 543 29 0.1183 0.0203 0.3793 1.7 1gn9:B, 1gnl:A, 1gnl:B, 1oa0:A, 1oa0:B, 1upx:A, 1upx:B
10 7qh2:C 467 80 0.2473 0.0493 0.2875 2.3 7qh2:F
11 5xyi:K 90 48 0.1613 0.1667 0.3125 3.4
12 1v2a:B 209 29 0.1290 0.0574 0.4138 3.8 1v2a:A, 1v2a:C, 1v2a:D
13 4iz9:A 381 36 0.1613 0.0394 0.4167 5.6
14 6iq5:A 459 17 0.0968 0.0196 0.5294 5.7 3pm0:A
15 6oyu:B 459 17 0.0968 0.0196 0.5294 6.0 6oyu:A, 6oyv:A, 6oyv:B
16 7w1y:4 653 36 0.0860 0.0123 0.2222 6.2 7w1y:C, 6xtx:4, 6xty:4
17 8b9d:4 677 36 0.0860 0.0118 0.2222 6.2 7pfo:4, 7plo:4
18 6iq5:B 437 17 0.0968 0.0206 0.5294 6.3
19 8i9p:Ce 194 46 0.1183 0.0567 0.2391 7.4 8i9r:Ce, 8i9t:Ce, 8i9v:Ce
20 6mpx:A 673 50 0.1505 0.0208 0.2800 8.4 1t61:C, 1t61:F
21 6mpx:A 673 50 0.1505 0.0208 0.2800 8.4 1t61:C, 1t61:F
22 7nc5:A 239 19 0.0968 0.0377 0.4737 9.0 7nc5:B, 7nc5:C, 7nc5:D, 7nc5:E, 7nc5:F, 7nc6:A, 7nc6:B, 7nc6:C, 7nc6:D, 7nc6:E, 7nc6:F, 7ncu:A, 7ncu:B
23 8cnr:A 548 29 0.1075 0.0182 0.3448 9.5 8cns:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218