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BioLiP
>protein
HIKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRPR

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6t78:A 77 74 1.0000 0.9610 1.0000 3.99e-50 6t78:B, 3u2b:C
2 4s2q:D 76 74 0.6351 0.6184 0.6351 4.00e-33 4euw:A
3 6l6y:D 80 73 0.6351 0.5875 0.6438 1.08e-32 4a3n:A, 3f27:D, 6l6y:F
4 1gt0:D 79 73 0.6486 0.6076 0.6575 2.84e-32 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
5 4y60:C 76 73 0.6216 0.6053 0.6301 1.06e-31
6 2gzk:A 159 71 0.5405 0.2516 0.5634 2.14e-24 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
7 2gzk:A 159 49 0.2027 0.0943 0.3061 0.006 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
8 7m5w:A 138 71 0.3649 0.1957 0.3803 1.40e-10 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
9 2lef:A 86 72 0.3514 0.3023 0.3611 5.51e-10
10 1j5n:A 93 54 0.2297 0.1828 0.3148 2.80e-06
11 1e7j:A 74 43 0.2162 0.2162 0.3721 6.60e-06 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
12 5jh0:D 157 56 0.2432 0.1146 0.3214 1.07e-04 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
13 5jh0:D 157 65 0.2432 0.1146 0.2769 4.66e-04 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
14 6hb4:A 197 46 0.2027 0.0761 0.3261 0.005 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
15 6cik:N 90 49 0.1892 0.1556 0.2857 0.030 6cg0:N, 6cim:N
16 6cij:N 133 38 0.1757 0.0977 0.3421 0.040 5zdz:N, 5ze1:N, 5ze2:N
17 4qr9:A 75 44 0.1892 0.1867 0.3182 2.1 4qr9:B
18 8v8m:A 389 11 0.1081 0.0206 0.7273 3.6 8v8m:C
19 6syn:A 471 54 0.2297 0.0361 0.3148 4.2
20 7smk:B 107 50 0.1892 0.1308 0.2800 4.5 7snv:B
21 5hha:B 272 21 0.1216 0.0331 0.4286 5.9 5hha:A
22 3j8h:A 3660 35 0.1622 0.0033 0.3429 7.0 3j8h:C, 3j8h:E, 3j8h:G
23 5gky:A 3660 35 0.1622 0.0033 0.3429 7.2 5gky:C, 5gky:E, 5gky:G, 5gkz:A, 5gkz:C, 5gkz:E, 5gkz:G, 5gl0:A, 5gl0:C, 5gl0:E, 5gl0:G, 5gl1:A, 5gl1:C, 5gl1:E, 5gl1:G
24 7x2y:A 342 17 0.1081 0.0234 0.4706 7.9 7x1x:A, 7x1x:B, 7x2y:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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