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BioLiP
>protein
HHVKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKP
WDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5twj:C 157 157 1.0000 1.0000 1.0000 1.90e-115 5twj:D, 5twj:A, 5twj:B, 5twk:C, 5twk:D, 5twk:A, 5twk:B
2 4fak:A 163 159 0.3057 0.2945 0.3019 4.73e-21
3 8xud:D 651 135 0.2357 0.0568 0.2741 0.37 6iqq:C, 6iqq:D, 5wql:D, 5wql:C, 8xud:C
4 1axn:A 323 66 0.1146 0.0557 0.2727 1.3 1aii:A
5 7du5:B 118 39 0.1083 0.1441 0.4359 1.6 7du5:A, 5hjz:A, 5hjz:B
6 8w5s:A 301 91 0.1592 0.0831 0.2747 1.9 8w5s:B, 8w5s:C
7 1vl8:B 252 54 0.0892 0.0556 0.2593 4.0 1vl8:A
8 1pca:A 402 24 0.0637 0.0249 0.4167 4.6
9 2h7y:A 280 76 0.1465 0.0821 0.3026 4.7 9cgl:A, 9cgl:B, 9cgn:A, 9cgn:B, 2h7x:A, 2h7x:B, 2h7y:B, 2hfj:A, 2hfk:A, 2hfk:B
10 4apm:A 339 77 0.1338 0.0619 0.2727 6.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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