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BioLiP
>protein
HHNKVRTCWNEGRPALAGWLQLPGTLHAEALARLDYDAVVIDMQHSPIDFGQVAPMLIAIELGGAEPFVRTQVNDPSDIM
KLLDAGAYGIIAPMVNTRAEAQTLASALHYSPRGLRSFGPRRPSLRYGSGYLAQASETVVGLAMIETREALANIDEILSV
DGIDGVFIGPTDLALDLGHAPLVDTEEAEVVSAIAHVRERAHAAGKRVGIFCGSGGFARVKLAEGFDFVTAAPDLAMLSA
AARQVIADARAL

The query sequence (length=252) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8adq:A 252 252 1.0000 1.0000 1.0000 0.0 7nnk:A, 7nnk:B, 7nr1:A, 7nuj:A, 7nuj:B, 7o5r:A, 7o5r:B, 7o5v:AAA, 7o5v:BBB, 7o5w:AAA, 7o5w:BBB, 7o87:AAA, 7o87:BBB, 7o9r:AAA, 7o9r:BBB, 7obu:A, 7obu:B, 6r62:A
2 1dxe:A 253 245 0.3095 0.3083 0.3184 5.11e-40 1dxe:B, 1dxf:A, 1dxf:B
3 2v5k:A 260 238 0.3413 0.3308 0.3613 1.87e-38 4b5s:A, 4b5s:B, 4b5t:A, 4b5t:B, 4b5u:A, 4b5u:B, 4b5v:A, 4b5v:B, 4b5w:A, 4b5w:B, 4b5w:C, 4b5w:D, 4b5w:E, 4b5w:F, 2v5k:B
4 7et9:A 254 237 0.3095 0.3071 0.3291 1.64e-33 7et9:B, 7et9:C, 7eta:A, 7eta:B, 7eta:C, 7etb:A, 7etb:B, 7etb:C, 7etc:A, 7etc:C, 7etc:B, 7etd:A, 7etd:B, 7etd:C, 7ete:A, 7ete:C, 7ete:B, 7etf:A, 7etf:B, 7etf:C, 7etg:A, 7etg:B, 7etg:C, 7eth:A, 7eth:B, 7eth:C, 7eti:A, 7eti:B, 7eti:C
5 2vwt:A 256 248 0.3254 0.3203 0.3306 3.46e-31 2vwt:B, 2vwt:C
6 4tv5:A 245 203 0.2738 0.2816 0.3399 2.12e-24 4tv6:A
7 1izc:A 299 246 0.2619 0.2207 0.2683 2.18e-11
8 2b3d:A 193 62 0.0794 0.1036 0.3226 0.011 2b3d:B
9 1avf:J 322 58 0.0714 0.0559 0.3103 0.45 1avf:A
10 3rpe:A 196 56 0.0675 0.0867 0.3036 1.7 3rpe:B
11 7n4y:B 2455 28 0.0556 0.0057 0.5000 2.1 7n4y:A
12 1a3w:A 492 77 0.0913 0.0467 0.2987 4.1 1a3w:B, 1a3x:A, 1a3x:B
13 3b40:A 400 44 0.0516 0.0325 0.2955 4.2
14 4yng:E 470 45 0.0595 0.0319 0.3333 4.5 8eq0:B, 8eq0:A, 4yng:A, 4yng:B, 4yng:C, 4yng:D, 4yng:F, 4yng:G, 4yng:H
15 4utu:A 229 102 0.0992 0.1092 0.2451 6.3 4utu:B, 4utw:A, 4utw:B, 4utw:C, 4utw:D
16 3ju8:A 486 50 0.0714 0.0370 0.3600 7.3 3ju8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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