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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HHMSEATLLSYTKKLLASPPQLSSTDLHDALLVILSLLQKCDTNSDESLSIYTKVSSFLTALRVTKLDHKAEYIAEAAKA
VLRHSDLVDLPLPVILDIVGTGGDGQNTFNVSTSAAIVASGIQGLKICKHGGKASTSNSGAGDLIGTLGCDMFKVNSSTV
PKLWPDNTFMFLLAPFFHHGMGHVSKIRKFLGIPTVFNVLGPLLHPVSHVNKRILGVYSKELAPEYAKAAALVYPGSETF
IVWGHVGLDEVSPIGKTTVWHILKTFQLEPSMFGLEEHELSKCASYGPKENARILKEEVLSGKYHLGDNNPIYDYILMNT
AVLYCLSQGHQNWKEGIIKAEESIHSGNALRSLEHFIDSVSSL

The query sequence (length=363) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7dsj:A 363 363 1.0000 1.0000 1.0000 0.0 7dsj:B, 7dso:A, 7dsp:B, 7dsp:A, 7dsr:A
2 5nof:A 325 296 0.2727 0.3046 0.3345 6.08e-37 5nof:B
3 2gvq:D 345 288 0.2562 0.2696 0.3229 4.35e-33 3gbr:A, 3gbr:B, 2gvq:A, 2gvq:B, 2gvq:C, 1gxb:A, 1gxb:B, 1gxb:C, 1gxb:D, 1zxy:A, 1zxy:B, 1zxy:C, 1zxy:D, 1zyk:A, 1zyk:B, 1zyk:C, 1zyk:D
4 1kgz:B 330 289 0.2700 0.2970 0.3391 1.89e-32 1kgz:A
5 5c2l:A 349 322 0.2562 0.2665 0.2888 1.75e-26 5bne:A, 5bne:B, 5bne:D, 5bo2:A, 5bo2:B, 5bo3:A, 5bo3:B, 2bpq:A, 2bpq:B, 5byt:A, 5byt:B, 5c1r:A, 5c1r:B, 5c7s:A, 5c7s:B, 4giu:A, 4giu:B, 4gkm:A, 4gkm:B, 4ij1:A, 4ij1:B, 4m0r:A, 4m0r:B, 4n5v:A, 4n5v:B, 4n8q:A, 4n8q:B, 4n93:A, 4n93:B, 4owm:A, 4owm:B, 4own:A, 4own:B, 4owo:A, 4owo:B, 4owq:A, 4owq:B, 4ows:A, 4ows:B, 4owu:A, 4owu:B, 4owv:A, 4owv:B, 3qqs:A, 3qqs:B, 3qqs:C, 3qqs:D, 3qs8:A, 3qs8:B, 3qs8:C, 3qs8:D, 3qsa:A, 3qsa:B, 3r6c:A, 3r6c:B, 3r88:A, 3r88:B, 3twp:A, 3twp:B, 3twp:C, 3twp:D, 3uu1:A, 3uu1:B, 3uu1:C, 3uu1:D, 4x58:A, 4x59:A, 4x59:B, 4x5b:A, 4x5b:B, 4x5c:A, 4x5c:B, 4x5d:A, 4x5d:B, 4x5e:A, 4x5e:B, 4zof:A, 4zof:B, 4zoj:A, 4zoj:B, 4zok:A, 4zok:B, 4ztv:A, 4ztv:B, 1zvw:A
6 4yi7:A 331 309 0.2287 0.2508 0.2686 2.76e-17
7 4ga6:A 493 92 0.0799 0.0588 0.3152 0.002 4ga4:A, 4ga4:B, 4ga6:B
8 8qlp:E 419 27 0.0358 0.0310 0.4815 2.0 8qlp:A, 8qlp:I, 8qlp:M
9 3ibj:B 643 36 0.0303 0.0171 0.3056 4.3
10 7qpi:A 238 51 0.0468 0.0714 0.3333 5.2
11 4ex5:A 486 31 0.0303 0.0226 0.3548 8.0 4ex5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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