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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HHMKLVKTPLKDCYIIEPTVFEDERGYFYEKYNEKKFEELTGLNGHFVQDNISKSSYGVLRGLHLQKGKHAQAKLVSCLE
GRVWDVAVDLRENSETFGKCYGMELSAENKLQFYVPRGFAHGFVVLSETAVFSYKCDNFYNKESEGSVKFNDSDLSIDWK
IPEADMILSEKDQNAPAFKDKNY

The query sequence (length=183) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6c46:A 183 183 1.0000 1.0000 1.0000 6.88e-138 6c46:D
2 1dzt:A 183 177 0.5301 0.5301 0.5480 6.94e-64 1dzt:B
3 6ndr:A 188 174 0.4973 0.4840 0.5230 4.59e-60 6ndr:B
4 2ixh:A 184 180 0.5082 0.5054 0.5167 4.61e-58 2ixh:B, 2ixi:B, 2ixi:A, 2ixk:A, 2ixk:B
5 1epz:A 183 178 0.4645 0.4645 0.4775 3.04e-55
6 3ryk:A 175 175 0.4262 0.4457 0.4457 1.21e-48 3ryk:B
7 7pvi:AAA 199 167 0.4262 0.3920 0.4671 2.82e-45 7pvi:BBB, 7pwb:AAA, 7pwb:BBB
8 2ixc:A 198 179 0.3661 0.3384 0.3743 1.28e-37 2ixc:B, 2ixc:C, 2ixc:D
9 7pwh:AAA 203 172 0.3279 0.2956 0.3488 5.67e-27
10 5buv:A 174 176 0.2842 0.2989 0.2955 4.00e-26 5buv:B
11 4hn1:C 201 162 0.2842 0.2587 0.3210 1.76e-24 4hmz:A, 4hmz:B, 4hmz:C, 4hmz:D, 4hn1:A, 4hn1:B, 4hn1:D
12 8dcl:A 185 166 0.3005 0.2973 0.3313 6.13e-24 7anj:A, 7anj:B, 8dak:A, 8dak:B, 8dcl:B
13 1oi6:A 202 159 0.2787 0.2525 0.3208 2.26e-21 1oi6:B
14 8dco:B 181 166 0.2842 0.2873 0.3133 1.41e-18 8db5:A, 8db5:B, 8db5:C, 8db5:D, 8db5:E, 8db5:F, 8db5:G, 8db5:H, 8dco:A
15 7m15:D 181 166 0.2842 0.2873 0.3133 2.25e-18 7an4:A, 7an4:B, 7an4:D, 7m14:A, 7m14:B, 7m14:C, 7m14:D, 7m14:E, 7m14:F, 7m15:A, 7m15:B, 7m15:C, 7m15:E, 7m15:F
16 2ixl:C 197 167 0.3279 0.3046 0.3593 4.84e-18 2ixl:A, 2ixl:B, 2ixl:D, 1nyw:A, 1nyw:B, 1nzc:A, 1nzc:B, 1nzc:C, 1nzc:D
17 5o26:A 273 49 0.0765 0.0513 0.2857 3.3 5o26:B, 5o2b:A
18 5wch:A 350 22 0.0601 0.0314 0.5000 5.3 5wch:B, 5wch:C, 5wch:D
19 5epa:A 258 48 0.0929 0.0659 0.3542 5.8 5epa:B, 5epa:C, 5epa:D, 5epa:E, 5epa:F
20 5gll:A 331 21 0.0546 0.0302 0.4762 6.1 5glk:B, 5glm:A, 5glm:B, 5gln:A, 5gln:B, 5glo:A, 5glo:B, 5glp:A, 5glp:B, 5glq:A, 5glq:B, 5glr:A, 5glr:B
21 7qiy:O 317 45 0.0820 0.0473 0.3333 6.9 8auv:Q, 8b2l:Q1, 7qiz:YA
22 2w90:B 471 48 0.0765 0.0297 0.2917 7.4 2w8z:A, 2w8z:B, 2w90:A
23 4iaw:A 180 75 0.1093 0.1111 0.2667 8.2 3dsz:A, 3dsz:B, 4iaw:B, 4iaw:C, 4iax:A
24 6ol2:A 279 49 0.0765 0.0502 0.2857 9.6 5drb:A, 8edh:A, 5o2b:B, 5tf9:A, 5tf9:B, 7uos:A, 5w7t:A, 5w7t:B, 5wdy:A, 5wdy:B, 5we8:A, 5we8:B
25 3dje:B 437 66 0.0929 0.0389 0.2576 9.8 3djd:A, 3djd:B, 3dje:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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