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BioLiP
>protein
HHMKLLKIYLGEKDKHSGKPLFEYLVKRAYELGMKGVTVYRGIMGFGHPDLPIVLEIVDEEERINLFLKEIDNIDFDGLV
FTADVNVVK

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1o51:A 89 89 1.0000 1.0000 1.0000 4.68e-60
2 2dcl:A 99 75 0.3820 0.3434 0.4533 6.64e-17 2dcl:C, 2dcl:B
3 2nog:A 157 44 0.1573 0.0892 0.3182 0.29 2nog:B
4 2fsh:A 691 24 0.1011 0.0130 0.3750 3.0 3bxz:A, 3bxz:B, 2fsg:A, 2fsi:A
5 2fsh:B 722 24 0.1011 0.0125 0.3750 3.1
6 2fsi:B 748 24 0.1011 0.0120 0.3750 3.1 2fsg:B
7 6s0k:h 838 24 0.1011 0.0107 0.3750 3.4 5k9t:A, 2vda:A
8 4aa1:A 598 29 0.1573 0.0234 0.4828 3.7 5a2r:A, 4aa2:A, 4asq:A, 4asr:A, 4ca7:A, 4ca8:A, 1j36:A, 1j36:B, 1j37:A, 1j37:B, 1j38:A, 1j38:B, 2x8y:A, 2x8z:A, 2x90:A, 2x91:A, 2x92:A, 2x93:A, 2x94:A, 2x95:A, 2x96:A, 2x97:A, 2xhm:A, 3zqz:A
9 3mbf:A 337 61 0.1910 0.0504 0.2787 5.0 3mbd:A, 3qrh:A
10 2x41:A 715 27 0.1348 0.0168 0.4444 6.7 2x42:A
11 6stt:A 178 53 0.1910 0.0955 0.3208 7.6 6stt:B
12 1d5a:A 733 38 0.1573 0.0191 0.3684 8.0
13 6br7:B 125 57 0.2135 0.1520 0.3333 8.3 6br7:A, 6vbf:A, 6vbf:B
14 7ktr:A 3042 21 0.1124 0.0033 0.4762 8.8
15 8xvg:L 3485 21 0.1124 0.0029 0.4762 8.8 8xvv:L
16 7mfp:B 354 26 0.1236 0.0311 0.4231 8.9 7mfo:A, 7mfo:B, 7mfo:C, 7mfo:D, 7mfo:E, 7mfo:F, 7mfo:G, 7mfo:H, 7mfo:I, 7mfo:J, 7mfp:A, 7mfp:C, 7mfp:D, 7mfq:A, 7mfq:B, 7mfq:C, 7mfq:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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