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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HHMHEIVDKNGKKVQKNNLNDEIKIIFTALDGTLLNSENKVSEQNLESLIRAQEKGIKVVIATGRSIFSVENVIGEHVKK
NRISLLPGIYMNGCVTFDEKGSRVIDRIMNNDLKMEIHEFSKQINISKYAIWFCLEKTYCFEINDCIREYMEVEALNPDV
IEDNMLEGLTVYKVLFSLPENILENTLKLCREKFSHRINVANTFQSYVELFHQHTNKFEGVKEICKYYNISLNNALAMGD
GENDIEMLSGLTHSVGVHNASEKVKNSAAYVGPSNNEHAISHVLKTFCDI

The query sequence (length=290) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4zev:A 290 290 1.0000 1.0000 1.0000 0.0 4qjb:A, 4qjb:B, 4zev:B, 4zew:A, 4zew:B, 4zex:A, 4zex:B
2 2b30:A 284 274 0.2793 0.2852 0.2956 4.39e-34 2b30:B, 2b30:C, 2b30:D
3 1nrw:A 285 292 0.2655 0.2702 0.2637 2.02e-17
4 1nf2:A 267 266 0.2345 0.2547 0.2556 2.84e-17 1nf2:B, 1nf2:C
5 1rkq:A 271 279 0.2448 0.2620 0.2545 1.51e-16 1rkq:B
6 4dwo:A 268 282 0.2207 0.2388 0.2270 8.84e-16 3niw:A
7 3r4c:A 268 272 0.2414 0.2612 0.2574 2.96e-15
8 3l7y:A 266 288 0.2552 0.2782 0.2569 8.45e-12
9 2rar:A 261 277 0.2448 0.2720 0.2563 1.44e-11 2rav:A, 2rb5:A, 2rbk:A, 1ymq:A
10 1rlm:A 269 280 0.2241 0.2416 0.2321 2.28e-11 1rlm:B, 1rlm:C, 1rlm:D, 1rlo:A, 1rlo:B, 1rlo:C, 1rlo:D, 1rlt:A, 1rlt:B, 1rlt:C, 1rlt:D
11 3pgv:A 259 275 0.2172 0.2432 0.2291 9.17e-11 3pgv:B, 3pgv:C, 3pgv:D
12 3gyg:D 250 71 0.0759 0.0880 0.3099 0.007
13 3gyg:B 230 71 0.0759 0.0957 0.3099 0.007
14 3gyg:A 285 71 0.0759 0.0772 0.3099 0.010 3gyg:C
15 1kyt:A 225 269 0.1759 0.2267 0.1896 0.015 1kyt:B, 1l6r:A, 1l6r:B
16 3zx4:B 254 49 0.0621 0.0709 0.3673 0.18 3zu6:B, 3zup:A, 3zup:B, 3zw7:A, 3zw7:B, 3zwd:A, 3zwd:B, 3zwk:A, 3zwk:B, 3zx4:A, 3zx5:A, 3zx5:B
17 5yeu:A 381 65 0.0552 0.0420 0.2462 0.28 5yeu:B
18 8a1z:A 396 36 0.0379 0.0278 0.3056 0.34 8a21:A, 5is2:A, 5it0:A, 5it4:A, 5jjb:A, 5jlp:A, 5jlr:A, 5jma:A, 3p96:A, 5t41:A
19 7bss:A 816 57 0.0690 0.0245 0.3509 0.39 7bsu:A, 7bsv:A, 7bsw:A, 7vsg:A
20 8q4s:A 295 42 0.0483 0.0475 0.3333 0.69 7qpl:A
21 6mxc:C 220 66 0.0724 0.0955 0.3182 1.9 6aqo:A, 6aqo:B, 6aqo:C, 6aqo:D, 6aqo:E, 6aqo:F, 6ar9:A, 6ar9:B, 6ar9:C, 6ar9:D, 6ar9:E, 6ar9:F, 6mxb:A, 6mxb:B, 6mxb:C, 6mxb:D, 6mxb:E, 6mxb:F, 6mxc:A, 6mxc:B, 6mxc:D, 6mxc:E, 6mxc:F, 6mxd:A, 6mxd:B, 6mxd:C, 6mxd:D, 7scr:A, 7scr:C, 7scr:B, 7scr:D, 7scr:E, 7scr:F
22 1f5s:A 210 37 0.0483 0.0667 0.3784 2.4 1f5s:B, 1j97:A, 1j97:B, 1l7m:A, 1l7m:B, 1l7n:A, 1l7n:B, 1l7o:A, 1l7o:B, 1l7p:A, 1l7p:B
23 4yzt:A 512 45 0.0586 0.0332 0.3778 2.4
24 6n36:A 265 35 0.0345 0.0377 0.2857 2.4
25 2i54:A 242 54 0.0483 0.0579 0.2593 3.0 2i54:B, 2i54:C, 2i55:A, 2i55:B, 2i55:C
26 3m1y:C 208 45 0.0586 0.0817 0.3778 3.0 3m1y:A, 3m1y:B, 3m1y:D
27 5csl:B 2072 86 0.0862 0.0121 0.2907 3.5 5ctb:A, 5ctb:C, 5ctc:A, 5ctc:B, 5ctc:C, 5cte:B, 5cte:C, 3h0s:A, 3k8x:A, 3k8x:B, 3k8x:C, 1od2:A, 1od2:B, 3pgq:A, 3pgq:C, 3tv5:A, 3tv5:B, 3tv5:C, 3tvu:A, 3tvu:B, 3tvu:C, 3tvw:A, 3tvw:B, 3tvw:C, 3tz3:A, 3tz3:B, 3tz3:C, 1w96:A, 1w96:B, 1w96:C, 4wyo:B, 4wyo:C, 4wz8:B, 4wz8:C
28 3if9:A 364 48 0.0517 0.0412 0.3125 3.5 3if9:B, 3if9:C, 3if9:D, 1ng3:A, 1ng3:B, 1ng4:A, 1ng4:B, 1ryi:A, 1ryi:B, 1ryi:C, 1ryi:D
29 2o1b:A 376 46 0.0414 0.0319 0.2609 5.7
30 5ujm:E 357 60 0.0690 0.0560 0.3333 5.8
31 8fvu:A 1361 51 0.0483 0.0103 0.2745 7.0 2vm5:A
32 1u02:A 229 46 0.0586 0.0742 0.3696 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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