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BioLiP
>protein
HHKASKRTQLRNELIKQGPKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIKEKYISERKKLYSEYQ
KAKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQSIKDKYIQEYKKAIQEYNARYP

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5jh0:D 157 157 1.0000 1.0000 1.0000 1.17e-113 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
2 2gzk:A 159 154 0.2930 0.2893 0.2987 3.28e-14 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
3 2gzk:A 159 64 0.1592 0.1572 0.3906 7.13e-08 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
4 2gzk:A 159 65 0.1019 0.1006 0.2462 0.27 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
5 1e7j:A 74 69 0.1592 0.3378 0.3623 5.92e-09 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
6 1e7j:A 74 68 0.0892 0.1892 0.2059 2.6 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
7 6cij:N 133 117 0.1847 0.2180 0.2479 8.35e-09 5zdz:N, 5ze1:N, 5ze2:N
8 6l6y:D 80 60 0.1210 0.2375 0.3167 2.20e-07 4a3n:A, 3f27:D, 6l6y:F
9 6l6y:D 80 55 0.0955 0.1875 0.2727 4.64e-04 4a3n:A, 3f27:D, 6l6y:F
10 1gt0:D 79 62 0.1338 0.2658 0.3387 3.07e-06 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
11 1gt0:D 79 55 0.0828 0.1646 0.2364 0.59 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
12 4y60:C 76 60 0.1083 0.2237 0.2833 3.61e-06
13 4y60:C 76 55 0.0892 0.1842 0.2545 0.003
14 6cik:N 90 42 0.0955 0.1667 0.3571 7.67e-05 6cg0:N, 6cim:N
15 6cik:N 90 65 0.1146 0.2000 0.2769 7.03e-04 6cg0:N, 6cim:N
16 4s2q:D 76 62 0.1210 0.2500 0.3065 8.73e-05 4euw:A
17 4s2q:D 76 52 0.0955 0.1974 0.2885 0.004 4euw:A
18 6t78:A 77 56 0.1146 0.2338 0.3214 2.18e-04 6t78:B, 3u2b:C
19 6t78:A 77 65 0.1146 0.2338 0.2769 0.001 6t78:B, 3u2b:C
20 1j5n:A 93 52 0.1146 0.1935 0.3462 2.60e-04
21 1j5n:A 93 50 0.1019 0.1720 0.3200 0.046
22 2lef:A 86 65 0.1274 0.2326 0.3077 2.60e-04
23 2lef:A 86 49 0.1019 0.1860 0.3265 4.52e-04
24 6hb4:A 197 61 0.1210 0.0964 0.3115 0.006 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
25 6hb4:A 197 72 0.1656 0.1320 0.3611 0.017 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
26 6hb4:A 197 162 0.2166 0.1726 0.2099 0.023 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
27 7m5w:A 138 49 0.1019 0.1159 0.3265 0.032 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
28 7m5w:A 138 49 0.0892 0.1014 0.2857 0.081 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
29 4qr9:A 75 52 0.0955 0.2000 0.2885 0.23 4qr9:B
30 5ze0:N 118 42 0.0892 0.1186 0.3333 0.40 1ckt:A
31 6z1p:BX 133 55 0.0955 0.1128 0.2727 0.85
32 2p9x:C 98 30 0.0764 0.1224 0.4000 2.5 2p9x:D
33 7dp0:A 223 45 0.0637 0.0448 0.2222 5.3 7dp0:B, 7dp1:A, 7dp1:B, 7dp2:A, 7dp2:B
34 6ihd:B 304 45 0.0764 0.0395 0.2667 8.1 6ihd:A, 6ihe:A, 6ihe:B
35 2oaj:A 875 37 0.0892 0.0160 0.3784 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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