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BioLiP
>protein
HHHMLENKLGIINQLELNRVEERVSKENAKRLYDSGDIDRIEVGTFKGLSYIHNYLFEDIYEFAGKVRSQNISKGNFRFA
PVMYLEIALEHIDKMPQRNLDEIVAKYVEMNIAHPFREGNGRATRIWLDLILKKELKRVVDWNLINKEDYLSAMERSPVK
DLEIKYLISNALTDKINDREIFMKGIDISYYYEGYTEYNVDEL

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ep2:K 204 203 1.0000 0.9951 1.0000 4.39e-149 6ep0:A, 6ep0:B, 6ep2:A, 6ep2:B, 6ep2:C, 6ep2:D, 6ep2:E, 6ep2:F, 6ep2:G, 6ep2:H, 6ep2:I, 6ep2:J, 6ep2:L, 6ep5:A, 6ep5:B, 6ep5:C, 6ep5:D, 6ep5:E, 6ep5:F
2 3s6a:A 178 171 0.5419 0.6180 0.6433 1.01e-79 3se5:A, 3se5:B, 3se5:C, 3se5:D, 3sn9:A, 3sn9:B, 3sn9:C, 3sn9:D, 3sn9:E, 3sn9:F, 3sn9:G, 3sn9:H, 3sn9:I, 3sn9:J, 3sn9:K, 3sn9:L, 3sn9:M, 3sn9:N, 3sn9:O, 3sn9:P, 3zlm:A
3 2f6s:A 180 173 0.5468 0.6167 0.6416 1.93e-66 2f6s:B
4 8idw:B 186 175 0.4483 0.4892 0.5200 2.78e-59 8idw:A, 8idw:C, 8idw:D
5 3zc7:A 199 166 0.2611 0.2663 0.3193 2.88e-13 3zcb:A
6 2jk8:A 291 175 0.2365 0.1649 0.2743 4.66e-07 5nh2:A
7 4n67:A 214 195 0.3005 0.2850 0.3128 2.15e-06
8 4wgj:A 210 147 0.1872 0.1810 0.2585 6.87e-05
9 8c0v:B 1030 54 0.0936 0.0184 0.3519 0.99 8c0v:D, 8c0v:F, 8c0w:A, 8c0w:C, 8c0w:E, 8u0v:D, 8u0v:F, 8u0v:B
10 7b7z:A 340 43 0.0640 0.0382 0.3023 2.0 7b80:A, 6i7g:A, 6i7g:B, 6i7i:A, 6i7k:A, 6i7l:A, 4u07:A, 4u07:B, 4u0s:A, 4u0s:B, 4u0u:A, 4u0u:B, 4u0z:A, 4u0z:B, 4u0z:C, 4u0z:D, 4u0z:E, 4u0z:F, 4u0z:G, 4u0z:H, 6zmd:B
11 7zew:A 117 54 0.0788 0.1368 0.2963 2.2 7zex:A
12 4rdr:A 706 98 0.1330 0.0382 0.2755 2.8
13 4x2d:A 227 34 0.0640 0.0573 0.3824 3.4
14 8sli:A 894 35 0.0542 0.0123 0.3143 6.1 8sli:D, 8sli:C, 8sli:B
15 7cb8:A 394 21 0.0443 0.0228 0.4286 6.1 7cb8:B
16 4itr:A 299 18 0.0493 0.0334 0.5556 7.5 4itr:B, 3n3u:A, 6siu:B, 6siu:A
17 1w52:X 448 69 0.0985 0.0446 0.2899 7.6
18 3oc4:A 422 53 0.0887 0.0427 0.3396 9.6 3oc4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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