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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HHHMENIKVVVWGLGAMGSGIAKMILFKKGMEIVGAIDTDPNKRGKDLNEILGTNSKPVYITSEPQDIIKKGSADIAVIV
TSSYVEKVFPLIKLAVENGINVITTAEEMAYPSAQHLELAKEIDRLARENGVSVLGTGINPGFVLDYLIIALTGVCVDVD
SIKAARINDLSPFGKAVMEEQGVGLTPEEFEEGVKNGTVAGHIGFPESISMICDALGWKLSGIEQTREPIVSKTYRETPY
ARVEPGYVAGCRQIGYGKVDGEVKIELEHPQQILPQKEGVETGDYIEIKGTPNIKLSIKPEIPGGLGTIALCVNMIPHVI
NAEPGLVTMLDLPVPRAIMGDARDMIRR

The query sequence (length=348) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7xdu:B 348 348 1.0000 1.0000 1.0000 0.0 7xdu:A
2 6g1h:A 342 343 0.5259 0.5351 0.5335 3.33e-125 6g1m:A, 6g1m:B, 6g1m:C, 6g1m:D
3 6iaq:D 339 338 0.3075 0.3156 0.3166 9.07e-40 6iaq:A, 6iaq:B, 6iaq:C
4 7qzl:D 341 328 0.2557 0.2610 0.2713 1.39e-33 6iau:B, 7qzl:A, 7qzn:A, 7qzn:B
5 7zbo:A 348 357 0.2557 0.2557 0.2493 1.13e-20 7r09:A, 7zbo:B, 7zbo:C, 7zbo:D
6 4pg7:A 402 135 0.1063 0.0920 0.2741 8.07e-04
7 5zz7:A 206 41 0.0517 0.0874 0.4390 0.029 7wb3:A, 7wb3:B, 5zz6:A, 5zz6:B, 5zz6:C, 5zz6:D, 5zz7:B
8 3wgy:B 324 146 0.1149 0.1235 0.2740 0.059 3wgq:A, 3wgz:B
9 8i7h:A 297 137 0.1006 0.1178 0.2555 0.059 8i7h:B, 8i7h:C, 8i7h:D
10 8hp3:A 298 366 0.2213 0.2584 0.2104 0.083 8hp3:B, 8hp3:C
11 3ing:A 319 110 0.0805 0.0878 0.2545 0.36
12 2cfb:A 360 100 0.0805 0.0778 0.2800 0.55
13 5x9d:A 302 139 0.1207 0.1391 0.3022 0.64 7f4c:A, 7f4c:B
14 8k06:B 304 50 0.0517 0.0592 0.3600 1.1 8k06:A, 8k06:C
15 2dt5:B 211 34 0.0374 0.0616 0.3824 2.5 2dt5:A, 3ikt:A, 3ikt:B, 3il2:A, 3il2:B, 1xcb:A, 1xcb:B, 1xcb:C, 1xcb:D, 1xcb:E, 1xcb:F, 1xcb:G
16 6zv9:B 169 41 0.0489 0.1006 0.4146 2.5 6wxp:A, 6wxp:B, 6wxp:C, 6wxp:D, 6wxp:E, 6zv9:A
17 1dap:A 320 32 0.0345 0.0375 0.3750 3.5 1dap:B, 2dap:A, 3dap:A, 3dap:B, 1f06:A, 1f06:B, 5loa:A, 5loa:B
18 5a01:A 681 90 0.0661 0.0338 0.2556 4.8 5a01:B, 5a01:C
19 4xgn:A 255 43 0.0345 0.0471 0.2791 4.9 4xgn:B, 4xgn:C, 4xgn:D, 4xgn:E, 4xgn:F, 4xgn:G, 4xgn:H
20 5fq6:M 948 105 0.0718 0.0264 0.2381 6.2 5fq6:D, 5fq6:I, 5fq6:B, 5fq7:D, 5fq7:B, 5fq8:B, 5fq8:D
21 2yyy:A 342 35 0.0316 0.0322 0.3143 6.4 2yyy:B
22 5cee:A 387 87 0.0776 0.0698 0.3103 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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