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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HHHLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRVVFRTCEREQNRVVFQMGT
SDAERALAVARLVENDVAGIDVNMGCPKKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIER
TGIAAIAVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIFLK
EGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLKSPQGRLLHAAQSSREICEAFGLGAFYEETTQEL

The query sequence (length=313) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4xp7:A 324 313 0.9712 0.9383 0.9712 0.0 6eza:A, 6eza:B, 6ezb:A, 6ezc:A, 4wfs:A
2 6ei9:A 306 244 0.2396 0.2451 0.3074 5.37e-19 6ei9:B
3 4bf9:A 318 263 0.2460 0.2421 0.2928 1.73e-16 4bfa:A, 4bfa:B, 4yco:A, 4yco:B, 4yco:C, 4ycp:A
4 3w9z:A 290 256 0.2236 0.2414 0.2734 2.84e-11
5 1vhn:A 305 246 0.1821 0.1869 0.2317 2.70e-07
6 3b0v:C 315 186 0.1534 0.1524 0.2581 7.27e-07 3b0p:A, 3b0p:B, 3b0u:X, 3b0u:Y, 3b0v:D
7 1ep3:A 311 198 0.1438 0.1447 0.2273 0.002 1ep1:A, 1ep2:A, 5ksw:A, 5ksw:C, 5ue9:A, 5ue9:C
8 2z6i:B 321 64 0.0639 0.0623 0.3125 0.094 2z6i:A, 2z6j:A, 2z6j:B
9 7l00:C 315 63 0.0575 0.0571 0.2857 0.19 7l00:A, 7l00:B, 7l00:D
10 3pg9:A 338 94 0.0703 0.0651 0.2340 0.38 3pg9:F, 3pg9:B, 3pg9:G, 3pg9:C, 3pg9:E, 3pg9:D, 3pg9:H, 1rzm:A, 1rzm:B
11 6ofu:B 264 51 0.0607 0.0720 0.3725 1.3 6ofu:A, 6ofu:C, 6ofu:D
12 3aov:A 404 94 0.0703 0.0545 0.2340 2.8 3aov:C, 3aow:A, 3aow:C, 3ath:A, 3ath:C, 3av7:A, 3av7:C, 3wx9:A, 3wx9:C
13 5zzq:A 355 46 0.0543 0.0479 0.3696 2.9 6a24:A, 5zzp:A
14 6a08:A 335 46 0.0543 0.0507 0.3696 3.1 6a00:A, 6a01:A, 6a0b:A, 6a0d:A, 6a0g:A, 6a0m:A, 6a0o:A, 6a0v:A, 6a0y:A, 6a11:A, 6a13:A, 6a19:A, 6a1a:A, 6a1b:A, 6a1h:A, 6a1l:A, 6a1m:A, 6a1n:A, 6a1p:A, 6a1r:A, 6a1w:A, 6a21:A, 6a23:A, 6a36:A, 6a39:A, 6a3d:A, 6a3t:A, 6a4g:A, 6a4h:A, 6ai7:A, 7bsr:A, 5zzr:A, 5zzs:A, 5zzt:A, 5zzx:A, 5zzy:A, 5zzz:A
15 1h5y:B 253 54 0.0543 0.0672 0.3148 3.6 1h5y:A
16 2f4f:A 130 85 0.0671 0.1615 0.2471 3.8 2f4f:B
17 3wag:B 401 40 0.0383 0.0299 0.3000 4.1 3wad:A, 3wag:A
18 2e4g:A 528 50 0.0447 0.0265 0.2800 4.1 2e4g:B, 7ju0:A, 7ju0:B, 2oa1:A, 2oa1:B, 2oal:A, 2oal:B, 6p00:A, 6p00:B, 6p2v:A, 6p2v:B
19 3kew:A 230 74 0.0703 0.0957 0.2973 5.3 3kew:B
20 8ez4:C 525 106 0.0799 0.0476 0.2358 7.2 5cbm:A, 5cbm:B, 5cbm:C, 5cbm:D, 5cbm:E, 5cbm:F, 5cbm:G, 5cbm:H, 5cbm:I, 5cbm:J, 5cbm:K, 5cbm:L, 6ee2:A, 6ee2:B, 6ee2:C, 6ee2:D, 6ee2:E, 6ee2:F, 6ee2:G, 6ee2:H, 6ee2:I, 6ee2:J, 6ee2:K, 6ee2:L, 6eee:A, 6eee:B, 6eee:C, 6eee:D, 6eee:E, 6eee:F, 6eee:G, 6eee:H, 6eee:I, 6eee:J, 6eee:K, 6eee:L, 8ez4:A, 8ez4:B, 8ez4:D, 8ez4:E, 8ez4:F, 8ez4:G, 8ez4:H, 8ez4:I, 8ez4:J, 8ez4:K, 8ez4:L, 4k3n:A, 4k3n:B, 4k3n:C, 4k3n:D, 4k3n:E, 4k3n:F, 4k3n:G, 4k3n:H, 4k3n:I, 4k3n:J, 4k3n:K, 4k3n:L, 3kqx:A, 3kqx:B, 3kqx:C, 3kqx:D, 3kqx:E, 3kqx:F, 3kqx:G, 3kqx:H, 3kqx:I, 3kqx:J, 3kqx:K, 3kqx:L, 3kqz:A, 3kqz:B, 3kqz:C, 3kqz:D, 3kqz:E, 3kqz:F, 3kqz:G, 3kqz:H, 3kqz:I, 3kqz:J, 3kqz:K, 3kqz:L, 3kr4:A, 3kr4:B, 3kr4:C, 3kr4:D, 3kr4:E, 3kr4:F, 3kr4:G, 3kr4:H, 3kr4:I, 3kr4:J, 3kr4:K, 3kr4:L, 3kr5:A, 3kr5:B, 3kr5:C, 3kr5:D, 3kr5:E, 3kr5:F, 3kr5:G, 3kr5:H, 3kr5:I, 3kr5:J, 3kr5:K, 3kr5:L, 4r6t:A, 4r6t:B, 4r6t:C, 4r6t:D, 4r6t:E, 4r6t:F, 4r6t:G, 4r6t:H, 4r6t:I, 4r6t:J, 4r6t:K, 4r6t:L, 4r76:A, 4r76:B, 4r76:C, 4r76:D, 4r76:E, 4r76:F, 4r76:G, 4r76:H, 4r76:I, 4r76:J, 4r76:K, 4r76:L, 4r7m:A, 4r7m:B, 4r7m:C, 4r7m:D, 4r7m:E, 4r7m:F, 4r7m:G, 4r7m:H, 4r7m:I, 4r7m:J, 4r7m:K, 4r7m:L, 7rie:A, 7rie:B, 7rie:C, 7rie:D, 7rie:E, 7rie:F, 7rie:G, 7rie:H, 7rie:I, 7rie:J, 7rie:K, 7rie:L, 7srv:A, 7srv:B, 7srv:C, 7srv:D, 7srv:E, 7srv:F, 8svm:A, 8svm:B, 8svm:C, 8svm:D, 8svm:E, 8svm:F, 8svm:G, 8svm:H, 8svm:I, 8svm:J, 8svm:K, 8svm:L, 8sw9:A, 8sw9:B, 8sw9:C, 8sw9:D, 8sw9:E, 8sw9:F, 8sw9:G, 8sw9:H, 8sw9:I, 8sw9:J, 8sw9:K, 8sw9:L, 7t3v:A, 7t3v:B, 7t3v:C, 7t3v:D, 7t3v:E, 7t3v:F, 3t8w:A, 3t8w:B, 3t8w:E, 3t8w:C, 3t8w:D, 3t8w:F, 3t8w:G, 3t8w:H, 3t8w:K, 3t8w:I, 3t8w:J, 3t8w:L, 4x2t:A, 4x2t:B, 4x2t:C, 4x2t:D, 4x2t:E, 4x2t:F, 4x2t:G, 4x2t:H, 4x2t:I, 4x2t:J, 4x2t:K, 4x2t:L, 4zx8:A, 4zx8:B, 4zx8:C, 4zx8:D, 4zx8:E, 4zx8:F, 4zx8:G, 4zx8:H, 4zx8:I, 4zx8:J, 4zx8:K, 4zx8:L, 4zx9:A, 4zx9:B, 4zx9:C, 4zx9:D, 4zx9:E, 4zx9:F, 4zx9:G, 4zx9:H, 4zx9:I, 4zx9:J, 4zx9:K, 4zx9:L, 4zy0:A, 4zy0:B, 4zy0:C, 4zy0:D, 4zy0:E, 4zy0:F, 4zy0:G, 4zy0:H, 4zy0:I, 4zy0:J, 4zy0:K, 4zy0:L, 4zy1:A, 4zy1:B, 4zy1:C, 4zy1:D, 4zy1:E, 4zy1:F, 4zy1:G, 4zy1:H, 4zy1:I, 4zy1:J, 4zy1:K, 4zy1:L, 4zy2:A, 4zy2:B, 4zy2:C, 4zy2:D, 4zy2:E, 4zy2:F, 4zy2:G, 4zy2:H, 4zy2:I, 4zy2:J, 4zy2:K, 4zy2:L, 4zyq:A, 4zyq:B, 4zyq:C, 4zyq:D, 4zyq:E, 4zyq:F, 4zyq:G, 4zyq:H, 4zyq:I, 4zyq:J, 4zyq:K, 4zyq:L
21 7qc8:A 250 60 0.0543 0.0680 0.2833 7.6 4ewn:D, 2wjz:E, 3zr4:E
22 5gvh:A 311 53 0.0479 0.0482 0.2830 7.9
23 6d50:B 840 44 0.0511 0.0190 0.3636 8.2 6d50:A, 6nzg:A, 6nzg:B, 5uj6:A, 5uj6:B
24 4jej:A 241 63 0.0575 0.0747 0.2857 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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