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BioLiP
>protein
HHHLEVLFQGPLSEFMLPKYAQVKEEISSWINQGKILPDQKIPTENELMQQFGVSRHTIRKAIGDLVSQGLLYSVQGGGT
FVA

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5d4s:B 83 83 1.0000 1.0000 1.0000 7.77e-58 5d4r:A, 5d4r:B, 5d4s:A, 4egy:A, 4egy:B, 4egz:A, 4egz:B, 4h0e:A, 4h0e:B
2 4wwc:A 213 81 0.3976 0.1549 0.4074 3.73e-18
3 4u0v:A 243 81 0.3976 0.1358 0.4074 5.47e-18 4u0v:B, 4u0w:A, 4u0w:B, 4u0y:A, 4u0y:B, 4u0y:C, 4u0y:D, 4wwc:B
4 6wfq:C 228 50 0.2048 0.0746 0.3400 0.001 6on4:A, 6on4:B, 6wfq:D, 6wg7:C, 6wg7:D, 6wg7:E, 6wg7:G, 6wg7:F, 6wg7:H
5 7zn5:B 435 65 0.2169 0.0414 0.2769 0.002 7zn5:A
6 7zla:B 458 65 0.2169 0.0393 0.2769 0.002 7pq9:AAA, 7pq9:BBB, 7pq9:CCC, 7pq9:DDD, 7pq9:EEE, 7pq9:FFF, 7pq9:GGG, 7pq9:HHH, 7pq9:III, 7pq9:JJJ, 7zpa:A, 7zpa:B
7 2di3:A 231 62 0.1928 0.0693 0.2581 0.004 2di3:B
8 7u5q:A 217 58 0.2289 0.0876 0.3276 0.026 7u5q:B
9 4p9u:E 272 48 0.2048 0.0625 0.3542 0.036 4p9u:F, 4p9u:A, 4p9u:B, 4pdk:A, 4pdk:B
10 5dv5:A 267 48 0.2048 0.0637 0.3542 0.037 5dv5:B
11 8gr7:A 326 49 0.1928 0.0491 0.3265 0.071 8gr7:B
12 7dd9:A 1129 53 0.1807 0.0133 0.2830 0.072 7dd9:C, 7dd9:E, 7dd9:G, 6lz1:A, 6lz1:B, 6lz1:C, 6lz1:D
13 1h9t:A 232 51 0.2169 0.0776 0.3529 0.13 1h9g:A, 1h9t:B, 1hw2:A, 1hw2:B
14 3iec:B 313 55 0.1928 0.0511 0.2909 0.38 5eak:A, 5eak:B, 3iec:A, 3iec:C, 3iec:D, 5kz8:A, 5kz8:B, 8txy:A, 8txy:B
15 5co4:B 161 11 0.1325 0.0683 1.0000 0.40 5co4:A
16 5kz7:A 296 55 0.1928 0.0541 0.2909 0.40 5kz7:B
17 3tgn:B 146 29 0.1446 0.0822 0.4138 0.75 3tgn:A
18 7ezg:A 275 10 0.1205 0.0364 1.0000 0.92 7f1e:A, 7f1e:B, 8owx:A, 8owx:B, 8p7b:A, 8p7c:A, 8p7c:C, 8p7d:A
19 7zhf:A 250 10 0.1205 0.0400 1.0000 1.2 7zhk:A, 7zhk:B, 7zhk:C
20 3k6p:A 226 15 0.1205 0.0442 0.6667 1.2 3d24:A, 3d24:C, 7e2e:A, 7e2e:B, 2pjl:A, 2pjl:B, 1xb7:A
21 7sqc:1C 1700 46 0.1928 0.0094 0.3478 1.3 7sqc:1D
22 8cbj:k 670 32 0.1446 0.0179 0.3750 1.5 6fai:k, 6y7c:t
23 8c00:t 619 32 0.1446 0.0194 0.3750 1.6 8c01:t, 6rbd:k, 7wtr:CC
24 7wtp:CC 661 32 0.1446 0.0182 0.3750 1.6 6eml:t, 6wdr:k, 7wtq:CC
25 1n83:A 251 10 0.1205 0.0398 1.0000 1.7 1s0x:A, 4s15:A, 4s15:B
26 6za0:A 240 29 0.1446 0.0500 0.4138 1.8 6z74:A, 6z74:B, 6z74:C, 6z74:D, 6za0:B, 6za3:A, 6za3:B, 6za7:A, 6za7:B, 6za7:C, 6za7:D, 6zab:A
27 7xs6:B 729 46 0.1566 0.0178 0.2826 2.7 8k3v:A, 8k3v:B, 7xs6:A, 7xs7:B, 7xs7:A
28 2fbh:A 137 30 0.1566 0.0949 0.4333 4.0
29 7qiy:P 75 40 0.1566 0.1733 0.3250 4.3 8auv:I, 8b2l:I1, 7qiz:ZA
30 1sy7:A 698 28 0.1325 0.0158 0.3929 4.4 1sy7:B
31 7suz:A 389 26 0.1446 0.0308 0.4615 4.5 7sux:A, 7sv0:A
32 6eon:A 754 41 0.1446 0.0159 0.2927 5.8
33 7zq9:B2 180 44 0.1807 0.0833 0.3409 7.0
34 3i5x:A 509 26 0.1205 0.0196 0.3846 7.4 4db2:C, 4db2:A, 4db2:B, 4db2:D, 4db4:A, 3i5y:A, 3i61:A, 3i62:A, 3sqw:A, 3sqx:A, 4tyn:A, 4tyw:A, 4tyy:A, 4tz0:A, 4tz6:A
35 8iya:A 161 25 0.1205 0.0621 0.4000 7.6 8iya:B, 8iya:C
36 7uka:A 368 59 0.2289 0.0516 0.3220 8.0
37 3mkv:A 414 60 0.1928 0.0386 0.2667 8.8 3mkv:B, 3mkv:C, 3mkv:D, 3mkv:E, 3mkv:F, 3mkv:G, 3mkv:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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