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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HHHHMNALEHQLDYPFADTLPAAGDTFEVAPGVRWLRMPLPFSLDHINLWLLRDEIDGQAGWTVVDCGIASDAIRTHWEQ
IFDAHLDGLPVLRVIVTHCHPDHFGLANWLCEGGDKRRWNVRLWMTLGEYMFGCLMAASNAGGAAAADHFARHGLTDAAS
LEKLRNRRSYYSDLVPAVPPRYRRLRDGDAVTIGTRTWRVVTGYGHSPEHCALHSEADGVLISGDMVLPRISTNVSVFDL
EPEANPLALYLQSLGRYETMAPDTLVLPSHGKPFRGVRTRIAQLRAHHDARLDEVRVACAEQPMSAADIVPIMFRRRELD
IHQMTFALGEAIAHLNLLWLAGELVREQGDDGVLRFRIAR

The query sequence (length=360) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5u8o:B 360 360 1.0000 1.0000 1.0000 0.0 5i0p:C, 5i0p:D, 5u8o:A, 5u8o:C, 5u8o:D
2 5i0p:B 323 350 0.8417 0.9381 0.8657 0.0 5i0p:A
3 6ao1:A 354 353 0.7917 0.8051 0.8074 0.0 6ao1:B, 6ao1:C, 6ao1:D
4 2zo4:A 301 324 0.2778 0.3322 0.3086 1.96e-25
5 4ad9:A 288 216 0.1444 0.1806 0.2407 6.95e-09 4ad9:B, 4ad9:C, 4ad9:D, 4ad9:E, 4ad9:F
6 2xf4:A 210 165 0.1222 0.2095 0.2667 7.01e-06
7 5aij:A 630 86 0.0806 0.0460 0.3372 1.38e-04 5a23:A, 5a23:B, 5a23:C, 5a23:D, 5ajl:A, 5ajl:B, 2cfu:A, 2cfz:A, 2cg2:A, 2cg3:A
8 4nur:A 633 102 0.0722 0.0411 0.2549 4.16e-04 4nur:B
9 2zwr:B 207 217 0.1528 0.2657 0.2535 4.56e-04 2zwr:A, 2zzi:A, 2zzi:B
10 7r3e:A 545 228 0.1667 0.1101 0.2632 4.81e-04 8b4a:A, 8b4a:B, 8b4a:C, 8b4a:D, 3dh8:A, 8dq0:C, 8dq0:D, 8dq1:C, 8dq1:D, 5hio:A, 5hip:A, 5hiq:A, 5his:A, 7kgw:A, 7kgx:A, 2q0i:A, 2q0j:A, 2q0j:B, 7r3e:B, 7r3f:A, 7r3j:A, 7r3j:B, 7r3j:C, 7r3j:D, 7tz9:A, 7tza:A, 7u6g:A, 2vw8:A
11 2yhe:A 639 102 0.0750 0.0423 0.2647 6.24e-04 4av7:A, 4av7:B, 4av7:C, 4av7:D, 4av7:E, 4av7:F, 4axh:A, 4axh:B, 2yhe:B, 2yhe:C, 2yhe:D, 2yhe:E, 2yhe:F
12 6v5m:A 221 72 0.0611 0.0995 0.3056 0.004 6v54:A, 6v61:A, 6v71:A
13 6sg9:FL 320 68 0.0694 0.0781 0.3676 0.036 6sgb:FL
14 7ev5:A 209 140 0.0889 0.1531 0.2286 0.045
15 3u16:B 437 55 0.0500 0.0412 0.3273 0.055 3o82:A, 3o82:B, 3o83:A, 3o83:B, 3o84:A, 3o84:B, 3u16:A, 3u17:A, 3u17:B
16 3tp9:A 473 115 0.0917 0.0698 0.2870 0.057 3tp9:B
17 5iwe:A 279 73 0.0667 0.0860 0.3288 0.12 1t6k:A, 1u1w:A, 1u1w:B, 1u1x:A, 1u1x:B, 1xua:A, 1xua:B
18 8g99:C 381 40 0.0417 0.0394 0.3750 0.60
19 8g9f:C 446 40 0.0417 0.0336 0.3750 0.61 8g9l:B, 8g9o:B, 8ucv:B, 8v6g:C, 8v6h:C, 8v6i:C, 8v6j:C
20 8yhe:H 524 62 0.0528 0.0363 0.3065 1.1 8yhd:H
21 1fka:E 157 27 0.0361 0.0828 0.4815 2.4 5a9z:BI, 5aa0:BI, 4aqy:E, 7azo:S5A, 7azo:S5B, 7azs:S5A, 7azs:S5B, 9b00:1e, 9b00:2e, 4b3m:E, 4b3r:E, 4b3s:E, 4b3t:E, 6b4v:NA, 6b4v:RC, 6boh:OA, 6boh:TC, 6bok:MA, 6bok:PC, 5br8:E, 6buw:QE, 6buw:XE, 6bz6:QE, 6bz6:XE, 6bz7:QE, 6bz7:XE, 6bz8:QE, 6bz8:XE, 6c5l:AE, 6c5l:CE, 6cae:1e, 6cae:2e, 6cao:E, 6cap:E, 6caq:E, 6car:E, 6cas:E, 6cfj:1e, 6cfj:2e, 6cfk:1e, 6cfk:2e, 6cfl:1e, 6cfl:2e, 8cvj:1e, 8cvj:2e, 8cvk:1e, 8cvk:2e, 8cvl:1e, 8cvl:2e, 5czp:XE, 5czp:QE, 6czr:1e, 6czr:2e, 5d8b:FA, 5d8b:BC, 5dfe:XE, 5dfe:QE, 5dox:1e, 5dox:2e, 5doy:1e, 5doy:2e, 4dr1:E, 4dr2:E, 4dr3:E, 4dr4:E, 4dr5:E, 4dr6:E, 4dr7:E, 6dti:E, 4duy:E, 4duz:E, 7dug:E, 7duh:E, 7dui:E, 7duj:E, 7duk:E, 7dul:E, 4dv0:E, 4dv1:E, 4dv2:E, 4dv3:E, 4dv4:E, 4dv5:E, 4dv6:E, 4dv7:E, 2e5l:E, 5e7k:4E, 5e7k:42, 5e81:4E, 5e81:42, 8ekb:1e, 8ekb:2e, 5el4:4E, 5el4:42, 5el5:4E, 5el5:42, 5el6:4E, 5el6:42, 5el7:4E, 5el7:42, 8ev6:1e, 8ev6:2e, 8ev7:1e, 8ev7:2e, 2f4v:E, 5f8k:1e, 5f8k:2e, 8fc1:1e, 8fc1:2e, 8fc2:1e, 8fc2:2e, 8fc3:1e, 8fc3:2e, 8fc4:1e, 8fc4:2e, 8fc5:1e, 8fc5:2e, 8fc6:1e, 8fc6:2e, 5fdu:1e, 5fdu:2e, 5fdv:1e, 5fdv:2e, 1fjg:E, 6fkr:1e, 6fkr:2e, 8fom:QE, 8fom:XE, 8fon:QE, 8fon:XE, 8g29:1e, 8g29:2e, 8g2a:1e, 8g2a:2e, 8g2b:1e, 8g2b:2e, 8g2c:1e, 8g2c:2e, 8g2d:1e, 8g2d:2e, 4gkj:E, 4gkk:E, 6gsj:4E, 6gsj:42, 6gsk:4E, 6gsk:42, 6gsl:4E, 6gsl:42, 6gzq:E2, 6gzx:E3, 6gzx:E4, 6gzz:E3, 6gzz:E4, 5hau:1e, 5hau:2e, 5hcp:1e, 5hcp:2e, 5hcq:1e, 5hcq:2e, 5hcr:1e, 5hcr:2e, 5hd1:1e, 5hd1:2e, 2hhh:E, 1hnw:E, 1hnx:E, 1hnz:E, 1hr0:E, 1i94:E, 1i97:E, 1ibk:E, 1ibl:E, 1ibm:E, 5ib7:4E, 5ib7:42, 5ib8:4E, 5ib8:42, 5ibb:4E, 5ibb:42, 5imq:I, 5imr:I, 5iwa:E, 5j30:QE, 5j30:XE, 5j3c:QE, 5j3c:XE, 5j4b:1e, 5j4b:2e, 5j4c:1e, 5j4c:2e, 5j4d:NA, 5j4d:SC, 1j5e:E, 5j8b:e, 4ji0:E, 4ji1:E, 4ji2:E, 4ji3:E, 4ji4:E, 4ji5:E, 4ji6:E, 4ji7:E, 4ji8:E, 7jql:1e, 7jql:2e, 7jqm:1e, 7jqm:2e, 4jv5:E, 4jya:E, 4k0k:E, 4khp:E, 4kvb:E, 4l47:QE, 4l47:XE, 4l71:QE, 4l71:XE, 4lel:QE, 4lel:XE, 4lf4:E, 4lf5:E, 4lf6:E, 4lf7:E, 4lf8:E, 4lf9:E, 4lfa:E, 4lfb:E, 4lfc:E, 4lfz:QE, 4lfz:XE, 7lh5:AE, 7lh5:CE, 5lmn:E, 5lmo:E, 5lmp:E, 5lmq:E, 5lmr:E, 5lms:E, 5lmt:E, 5lmu:E, 5lmv:E, 4lnt:QE, 4lnt:XE, 4lsk:QE, 4lsk:XE, 4lt8:QE, 4lt8:XE, 7md7:1e, 7md7:2e, 6mkn:E, 6mpf:E, 6mpi:E, 6n1d:AS05, 6n1d:BS05, 1n32:E, 1n33:E, 1n34:E, 1n36:E, 6n9e:1e, 6n9e:2e, 6n9f:1e, 6n9f:2e, 5ndj:4E, 5ndj:42, 5ndk:4E, 5ndk:42, 6nd5:1e, 6nd5:2e, 6nd6:1e, 6nd6:2e, 6ndk:QE, 6ndk:XE, 6nsh:QE, 6nsh:XE, 6nta:QE, 6nta:XE, 6nuo:QE, 6nuo:XE, 6nwy:QE, 6nwy:XE, 4nxm:E, 4nxn:E, 6ny6:E, 6o3m:QE, 6o3m:XE, 6o97:1e, 6o97:2e, 6of1:1e, 6of1:2e, 6of6:QE, 6of6:XE, 6oj2:QE, 6oj2:XE, 6ope:QE, 6ope:XE, 6ord:QE, 6ord:XE, 6osi:QE, 6osi:XE, 3oto:E, 5ot7:D, 6otr:QE, 6otr:XE, 4ox9:E, 6oxa:QE, 6oxa:XE, 6oxi:QE, 6oxi:XE, 4p6f:QE, 4p6f:XE, 4p70:QE, 4p70:XE, 6q95:j, 6qnq:4E, 6qnq:42, 6qnr:4E, 6qnr:42, 7rq8:1e, 7rq8:2e, 7rq9:1e, 7rq9:2e, 7rqa:1e, 7rqa:2e, 7rqb:1e, 7rqb:2e, 7rqc:1e, 7rqc:2e, 7rqd:1e, 7rqd:2e, 7rqe:1e, 7rqe:2e, 3t1h:E, 3t1y:E, 8t8b:1e, 8t8b:2e, 8t8c:1e, 8t8c:2e, 4tua:QE, 4tua:XE, 4tub:QE, 4tub:XE, 4tuc:QE, 4tuc:XE, 4tud:QE, 4tud:XE, 4tue:QE, 4tue:XE, 7u2h:1e, 7u2h:2e, 7u2i:1e, 7u2i:2e, 7u2j:1e, 7u2j:2e, 6ucq:1e, 6ucq:2e, 8ud6:1e, 8ud6:2e, 8ud7:1e, 8ud7:2e, 8ud8:1e, 8ud8:2e, 6uo1:1e, 6uo1:2e, 5uq7:e, 5uq8:e, 2uu9:E, 2uua:E, 2uub:E, 2uuc:E, 8uvr:1e, 8uvr:2e, 8uvs:1e, 8uvs:2e, 2uxb:E, 2uxc:E, 2uxd:E, 7v2l:E, 7v2m:E, 7v2n:E, 7v2o:E, 7v2p:E, 7v2q:E, 4v49:AE, 4v4a:AE, 4v4g:AE, 4v4g:CE, 4v4g:EE, 4v4g:GE, 4v4g:IE, 4v4i:f, 4v4j:f, 4v4p:BH, 4v4r:AE, 4v4s:AE, 4v4t:AE, 4v4x:AH, 4v4y:AH, 4v4z:AH, 4v51:AE, 4v51:CE, 4v5a:AE, 4v5a:CE, 4v5c:AE, 4v5c:CE, 4v5d:AE, 4v5d:CE, 4v5e:AE, 4v5e:CE, 4v5f:AE, 4v5f:CE, 4v5g:AE, 4v5g:CE, 4v5j:AE, 4v5j:CE, 4v5k:AE, 4v5k:CE, 4v5l:AE, 4v5m:AE, 4v5n:AE, 4v5p:AE, 4v5p:CE, 4v5q:AE, 4v5q:CE, 4v5r:AE, 4v5r:CE, 4v5s:AE, 4v5s:CE, 4v63:AE, 4v63:CE, 4v67:AE, 4v67:CE, 4v68:AE, 4v6a:AE, 4v6a:CE, 4v6f:BH, 4v6f:CH, 4v6g:AH, 4v6g:CH, 4v7j:Ae, 4v7j:Be, 4v7k:Ae, 4v7k:Be, 4v7l:AE, 4v7l:CE, 4v7m:AE, 4v7m:CE, 4v7p:AE, 4v7p:DE, 4v7w:AE, 4v7w:CE, 4v7x:AE, 4v7x:CE, 4v7y:AE, 4v7y:CE, 4v7z:AE, 4v7z:CE, 4v83:AE, 4v83:CE, 4v84:AE, 4v84:CE, 4v87:BH, 4v87:CH, 4v8a:CE, 4v8a:DE, 4v8b:AH, 4v8b:CH, 4v8c:CH, 4v8c:DH, 4v8d:AH, 4v8d:CH, 4v8e:BH, 4v8e:DH, 4v8f:BH, 4v8f:CH, 4v8g:AE, 4v8g:CE, 4v8h:AE, 4v8h:CE, 4v8i:AE, 4v8i:CE, 4v8j:AE, 4v8j:CE, 4v8n:AE, 4v8n:CE, 4v8o:AE, 4v8q:BE, 4v8u:AE, 4v8u:CE, 4v8x:AE, 4v8x:CE, 5v8i:1e, 5v8i:2e, 4v90:AE, 4v95:AE, 4v95:CE, 4v97:AE, 4v97:CE, 4v9a:AH, 4v9a:CH, 4v9b:AH, 4v9b:CH, 4v9h:AE, 4v9i:AE, 4v9i:CE, 4v9j:AE, 4v9j:CE, 4v9k:AE, 4v9k:CE, 4v9l:AE, 4v9l:CE, 4v9m:AE, 4v9m:CE, 4v9n:AE, 4v9n:CE, 4v9q:BE, 4v9q:DE, 4v9r:AE, 4v9r:CE, 4v9s:AE, 4v9s:CE, 5vp2:1e, 5vp2:2e, 5vpo:QE, 5vpo:XE, 5vpp:QE, 5vpp:XE, 2vqe:E, 2vqf:E, 8vtu:1e, 8vtu:2e, 8vtv:1e, 8vtv:2e, 8vtw:1e, 8vtw:2e, 8vtx:1e, 8vtx:2e, 8vty:1e, 8vty:2e, 1vvj:QE, 1vvj:XE, 1vy4:AE, 1vy4:CE, 1vy5:AE, 1vy5:CE, 1vy6:AE, 1vy6:CE, 1vy7:AE, 1vy7:CE, 4w29:AE, 4w29:CE, 4w2e:e, 4w2f:AE, 4w2f:CE, 4w2g:AE, 4w2g:CE, 4w2h:AE, 4w2h:CE, 4w2i:AE, 4w2i:CE, 4w4g:QE, 4w4g:XE, 5w4k:1e, 5w4k:2e, 5wis:1e, 5wis:2e, 5wit:1e, 5wit:2e, 5wnp:E, 5wnq:E, 5wnr:E, 5wns:E, 5wnt:E, 5wnu:E, 5wnv:E, 4wpo:BE, 4wpo:DE, 4wq1:4E, 4wq1:42, 4wqf:BE, 4wqf:DE, 4wqr:4E, 4wqr:42, 4wqu:BE, 4wqu:DE, 4wqy:BE, 4wqy:DE, 4wr6:4E, 4wr6:42, 4wra:4E, 4wra:42, 4wro:4E, 4wsd:4E, 4wsd:42, 4wsm:4E, 4wsm:42, 4wt1:4E, 4wt1:42, 4wt8:AE, 4wt8:BE, 4wu1:4E, 4wu1:42, 4wzd:4E, 4wzd:42, 4wzo:4E, 4wzo:42, 4x62:E, 4x64:E, 4x65:E, 4x66:E, 4xej:AS05, 4xej:BS05, 6xhv:1e, 6xhv:2e, 6xhw:1e, 6xhw:2e, 6xhx:1e, 6xhx:2e, 6xhy:1e, 6xhy:2e, 1xmo:E, 1xmq:E, 1xnq:E, 1xnr:E, 6xqd:1e, 6xqd:2e, 6xqe:1e, 6xqe:2e, 4y4o:1e, 4y4o:2e, 4y4p:1e, 4y4p:2e, 4yhh:E, 4ypb:QE, 4ypb:XE, 4yy3:E, 4yzv:QE, 4yzv:XE, 4z3s:1e, 4z3s:2e, 4z8c:1e, 4z8c:2e, 4zer:1e, 4zer:2e, 5zlu:K, 2zm6:E, 4zsn:QE, 4zsn:XE
22 6l4m:A 357 170 0.1139 0.1148 0.2412 4.0
23 7qwj:A 298 52 0.0500 0.0604 0.3462 4.6 8a8f:A
24 7fct:B 239 60 0.0500 0.0753 0.3000 4.6 7fct:A
25 3rg2:C 613 40 0.0444 0.0261 0.4000 4.8 6iyk:A, 6iyk:B, 6iyl:A, 6iyl:B, 4iz6:A, 4iz6:B, 8k5s:A, 8k5s:B, 8k5t:A, 8k5t:B, 3rg2:A, 3rg2:B, 3rg2:H, 3rg2:D, 3rg2:E, 3rg2:F, 3rg2:I, 3rg2:G, 3rg2:J
26 1jr7:A 306 35 0.0361 0.0425 0.3714 5.3 8cdf:A, 6gpe:A, 6gpe:B, 6gpn:A, 6gpn:B, 6hl8:A, 6hl8:B, 6hl9:A, 6hl9:B, 2r6s:A
27 3zwf:A 259 49 0.0417 0.0579 0.3061 5.8 3zwf:B
28 4ysb:A 225 106 0.0917 0.1467 0.3113 6.4 4ysb:B
29 3kq4:A 385 41 0.0361 0.0338 0.3171 6.6 3kq4:C, 3kq4:E, 2pmv:A, 2pmv:C
30 8c2z:A 334 88 0.0722 0.0778 0.2955 6.8
31 6zej:I 351 51 0.0500 0.0513 0.3529 7.3 6alz:A, 6alz:B, 2bcd:A, 2bdx:A, 6czo:A, 6czo:C, 6dno:A, 8dwk:A, 8dwk:B, 8dwl:C, 8dwl:A, 3e7a:A, 3e7a:B, 3e7b:A, 3e7b:B, 3egg:A, 3egg:B, 3egh:A, 3egh:B, 1fjm:A, 1fjm:B, 6g0i:A, 6g0j:A, 4g9j:A, 4g9j:B, 6ghm:A, 6ghm:B, 3hvq:A, 3hvq:B, 1it6:A, 1it6:B, 1jk7:A, 4mov:A, 4mov:B, 4moy:A, 4mp0:C, 4mp0:A, 3n5u:A, 3n5u:B, 7nzm:B, 2o8g:A, 2o8g:B, 6obn:A, 6obn:B, 6obp:A, 6obq:A, 6obq:B, 6obr:A, 6obr:B, 6obs:A, 6obs:B, 6obu:A, 6obu:B, 7qfb:A, 7sd0:C, 8sw5:A, 8sw5:B, 8sw6:A, 8sw6:B, 7t0y:A, 7t0y:C, 7tvf:F, 7tvf:C, 7txh:C, 7txh:F, 1u32:A, 8u5g:A, 7upi:B, 4ut2:A, 4ut2:B, 4ut3:A, 4ut3:B, 4v0u:D, 4v0u:F, 4v0u:H, 4v0u:J, 4v0u:N, 4v0v:A, 4v0v:C, 4v0w:A, 4v0w:C, 4v0x:A, 3v4y:A, 3v4y:C, 3v4y:E, 3v4y:G, 4xpn:A, 4xpn:C, 6zee:P, 6zee:Q, 6zee:B, 6zee:A, 6zee:I, 6zee:K, 6zef:A, 6zef:B, 6zeg:A, 6zeg:B, 6zeh:A, 6zeh:B, 6zei:A, 6zei:B, 6zej:D, 6zej:A, 6zej:F, 6zej:L, 6zej:O, 6zk6:A, 5zqv:A, 5zqv:B, 5zqv:D, 5zqv:C, 5zt0:A, 5zt0:C, 5zt0:B, 5zt0:D, 5zt0:E, 5zt0:F
32 6aps:A 185 69 0.0528 0.1027 0.2754 7.3 6aps:B, 6apt:A, 6apt:B, 6apu:A, 6apu:B, 6apv:A, 6apv:B, 6apv:C, 6apv:D, 5jsq:A, 5jsq:B, 5jv5:A, 5jv5:B, 5k51:A, 5k51:B, 5k51:C, 5k51:D, 5kam:A, 5kam:C, 5kap:A, 5kap:B, 6mxg:A, 6mxg:B, 7sb7:A, 7sb7:B, 8tr1:A, 8tr1:B, 8tr1:C, 8tr1:D, 8ts4:A, 8ts4:B
33 8t3k:C 541 61 0.0528 0.0351 0.3115 8.8
34 8fhk:C 574 61 0.0528 0.0331 0.3115 9.2 8fmv:C, 8fpf:C, 7m33:C, 8szc:C, 8t1p:C
35 1s70:A 309 51 0.0500 0.0583 0.3529 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218