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BioLiP
>protein
HHHHMIVRRATYEDLSQLAVLFDEYRQFYGASSNLEESHHFLKQRFENKESVFFIHIKDEKITGFVLLYLGFSSVACSTY
YILDDVYVTPLFRRQGSAKQLIDTAILFAKQENALRISLETQSNNHESHRLYEKMGFIREFQTFHCFL

The query sequence (length=148) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8a9n:A 150 149 0.9865 0.9733 0.9799 5.66e-105 8a9n:B, 8a9o:A, 8a9o:B
2 3pp9:A 176 87 0.1959 0.1648 0.3333 9.15e-09 3pp9:B, 3pp9:C
3 4pv6:G 154 47 0.1149 0.1104 0.3617 9.36e-06 4pv6:C, 4pv6:I, 4pv6:F, 4pv6:A, 4pv6:H, 4pv6:J, 4pv6:E
4 6ygb:A 159 57 0.1554 0.1447 0.4035 1.12e-05 6ygc:A, 6ygd:A
5 6wqc:A 293 89 0.2095 0.1058 0.3483 2.45e-05 6wqb:A
6 6wqc:A 293 56 0.0946 0.0478 0.2500 0.24 6wqb:A
7 7mx2:A 152 57 0.1216 0.1184 0.3158 1.02e-04 7rb3:A
8 5c88:A 158 92 0.1757 0.1646 0.2826 1.76e-04 6ag4:A, 6ag5:A, 5c88:B, 4lx9:A, 4r3k:A, 4r3l:A, 2x7b:A
9 1s5k:A 153 87 0.1554 0.1503 0.2644 2.15e-04 1s3z:A, 1s3z:B, 1s5k:B, 1s60:A, 2vbq:A, 2vbq:B
10 1tiq:A 173 100 0.1824 0.1561 0.2700 2.55e-04 1tiq:B
11 4evy:A 147 109 0.1824 0.1837 0.2477 6.21e-04 4evy:B
12 7ovv:B 196 83 0.1622 0.1224 0.2892 6.30e-04 7ovv:A
13 7wx5:A 288 104 0.2297 0.1181 0.3269 7.33e-04 7wx6:A, 7wx7:A
14 7wx5:A 288 55 0.1014 0.0521 0.2727 0.73 7wx6:A, 7wx7:A
15 7l1k:A 149 48 0.1149 0.1141 0.3542 0.001
16 2bei:A 156 90 0.1622 0.1538 0.2667 0.002 2q4v:A
17 7zkt:B 202 73 0.1351 0.0990 0.2740 0.011 7zhc:A, 7zhc:B, 7zkt:A, 7zkt:C, 7zkt:D, 7zkt:E, 7zkt:F, 7zkt:G, 7zkt:H
18 1wwz:A 157 101 0.1689 0.1592 0.2475 0.031 1wwz:B
19 2ge3:A 164 114 0.1824 0.1646 0.2368 0.043 2ge3:B, 2ge3:C
20 2cy2:A 174 148 0.2230 0.1897 0.2230 0.044
21 1qsm:D 152 140 0.2162 0.2105 0.2286 0.080 1qsm:A, 1qsm:B, 1qsm:C
22 6z00:A 156 57 0.1081 0.1026 0.2807 0.13 6yzz:A, 6z00:B
23 2cnm:A 151 64 0.1216 0.1192 0.2812 0.13 2cnm:B, 2cnm:C, 2cns:A, 2cns:B, 2cns:C, 2cnt:A, 2cnt:B, 2cnt:C, 2cnt:D
24 4mbu:A 165 139 0.1959 0.1758 0.2086 0.16 4mbu:B
25 1t8h:A 272 41 0.0811 0.0441 0.2927 0.86 6t0y:A, 6t1b:A
26 8gxk:B 188 26 0.0743 0.0585 0.4231 0.91 8gxk:A, 8gxk:C, 8gxk:D
27 6ao7:A 153 70 0.1284 0.1242 0.2714 0.95
28 1yvk:A 152 53 0.1149 0.1118 0.3208 1.1 1yvk:B, 1yvk:C, 1yvk:D
29 4qc6:A 179 58 0.1216 0.1006 0.3103 1.3 4qc6:B
30 2i79:A 171 150 0.2162 0.1871 0.2133 1.8 2i79:B, 2i79:C, 2i79:D, 2i79:E, 2i79:F
31 1i1d:D 161 55 0.1081 0.0994 0.2909 2.6 1i12:A, 1i12:B, 1i12:C, 1i12:D, 1i1d:A, 1i1d:B, 1i1d:C
32 2cfb:A 360 80 0.1351 0.0556 0.2500 2.9
33 3fbu:A 166 53 0.1081 0.0964 0.3019 3.2
34 2zpa:B 662 53 0.0946 0.0211 0.2642 3.8 2zpa:A
35 2yvx:A 442 28 0.0608 0.0204 0.3214 4.0 8h5e:A, 4u9n:B, 4wib:B, 5x9g:A, 5x9g:B, 5x9g:C, 5x9g:D, 5x9h:A, 5x9h:B, 2yvx:B, 2yvx:C, 2yvx:D, 2yvy:A, 2zy9:A, 2zy9:B
36 3ld2:B 162 94 0.1689 0.1543 0.2660 4.2 3ld2:A, 3ld2:C, 3ld2:D
37 8g0l:A 158 50 0.0811 0.0759 0.2400 5.4 7stx:A, 6vp9:A
38 7fbg:A 268 58 0.1014 0.0560 0.2586 5.6
39 6li9:B 458 65 0.1419 0.0459 0.3231 5.9 6li9:D
40 8ear:A 2389 93 0.1554 0.0096 0.2473 6.1 8eaq:A, 8eaq:B, 8eaq:C, 8eaq:D, 8ear:D, 8ear:B, 8ear:C
41 7lhf:C 2300 93 0.1554 0.0100 0.2473 6.1 7lhe:A, 7lhe:D, 7lhe:C, 7lhe:B, 7lhf:A, 7lhf:D, 7lhf:B
42 6mu1:A 2149 93 0.1554 0.0107 0.2473 6.6 6mu1:C, 6mu1:B, 6mu1:D
43 5d6a:A 548 35 0.0946 0.0255 0.4000 7.9
44 7ypv:A 172 55 0.1081 0.0930 0.2909 8.0 7ypu:A, 7ypu:B, 7ypu:C, 7ypu:D, 7ypu:E, 7ypu:F, 7ypu:G, 7ypu:H, 7ypv:B, 7ypv:C, 7ypv:D, 7ypv:E, 7ypv:F, 7ypv:G, 7ypv:H
45 8dd5:A 272 37 0.0743 0.0404 0.2973 8.4 1m36:A, 2ozu:A, 2rc4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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