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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HHHHHPFRATGDGLFIMNEGNFQYGNATLSYYDPETKKVENEIFYRANAMKLGDVAQSMIVRDTIGWVVVNNSHVIFAIS
TNTFKEVGRITGLTSPRYIHFISDEKAYITQIWDYRIFIVNPKTYQITGYIECPDMTMETGSTEQMVQYGKYVYVNCWSY
QNRILKIDTTTDKVVDQLTVGIQPTSLVMDKNFKMWTITDGGYKGSPYGYEEPSLYRIDAETFKIEKQFKFQLGDAPSEV
QLNGAGDELYWINKDIWRMSVDEERVPVRPFLKYRDTKYYGLTVSPKNGDVYVADAIDYQQQGMIYRYTEDGELVDEFYV
GIIPGAFCWK

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8p97:B 335 326 0.9848 0.9701 0.9969 0.0 8okv:B, 8okv:A, 8okv:C, 8okv:D, 8p98:B, 8puj:A
2 8bn0:A 342 324 0.8091 0.7807 0.8241 0.0 8bai:A, 8bai:B, 8bai:C, 8bai:D, 8baz:A, 8baz:B, 8bb0:A, 8bb0:B, 8bmy:A, 8bmy:B, 8bmz:A, 8bmz:B
3 8blw:B 626 327 0.2212 0.1166 0.2232 7.81e-08 8ptd:A, 8ptf:A
4 8bx8:C 3947 104 0.0788 0.0066 0.2500 1.7 7k58:C, 7k5b:C, 7kek:C
5 6mo6:B 414 106 0.0788 0.0628 0.2453 2.2 8dhk:A, 8dhk:B, 6mo6:A, 6mo6:C, 6mo6:D, 6mp5:A, 6mp5:B, 6mp5:C, 6mp5:D, 6oi5:A, 6oi5:B, 6oi6:A, 6oi6:B, 6oib:A, 6oib:B, 6oic:A, 6oic:B, 6wh6:A, 6wh6:B
6 2mze:A 250 71 0.0515 0.0680 0.2394 2.6 2ddy:A, 8jud:A, 8juf:A, 8jug:A, 8k4z:A, 1mmp:A, 1mmp:B, 1mmq:A, 1mmr:A, 2mzh:A, 2mzi:A, 5ue2:A, 5ue5:A, 7wxx:A, 2y6c:A, 2y6d:A
7 6meq:A 416 36 0.0394 0.0312 0.3611 3.7 5k8r:A, 6mer:A
8 4ywe:A 476 50 0.0394 0.0273 0.2600 4.9 4ywe:B, 4ywe:C, 4ywe:D, 4ywe:E, 4ywe:F, 4ywe:G, 4ywe:H
9 6ou1:A 260 96 0.0848 0.1077 0.2917 7.2 8frr:A, 6ou1:B, 7sib:A, 7sij:A, 7sjt:A, 7sju:A, 7sjv:A, 7sjw:A, 7skd:A, 7ske:A, 7skf:A, 7skg:A, 7t8d:A, 4wxq:A, 4wxs:A, 4wxu:A
10 4f0c:A 228 63 0.0515 0.0746 0.2698 8.5 5o00:A
11 5kyn:A 730 65 0.0515 0.0233 0.2615 9.6 3efo:A, 3eg9:A, 3egd:A, 3egx:A, 8hr0:A, 5kyn:B, 5kyu:A, 5kyw:A, 5kyx:A, 5kyy:A, 2nup:A, 2nut:A, 5vne:A, 5vnf:A, 5vng:A, 5vnh:A, 5vni:A, 5vnj:A, 5vnk:A, 5vnl:A, 5vnm:A, 5vnn:A, 5vno:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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