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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HHHHHHSQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDE
KVRRREEPEKWPLPP

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7sow:A 95 95 1.0000 1.0000 1.0000 1.98e-66 8ey6:A, 8ey7:A, 8ey8:A, 8g90:A, 8g91:A, 7sop:A, 7soq:A, 7sor:A, 7sor:C, 7sos:A, 7sot:A, 7sou:A, 7sov:A
2 2vod:B 188 80 0.3684 0.1862 0.4375 9.45e-13 2vod:A, 2von:A, 2von:B, 2voo:A, 2voo:B, 2vop:A, 1yty:A, 1yty:B, 1zh5:A, 1zh5:B
3 7slp:B 321 84 0.3579 0.1059 0.4048 4.66e-12 6d12:A, 6d12:B, 7slq:B, 4wkr:A, 4wkr:B
4 7lma:H 199 83 0.2842 0.1357 0.3253 0.002 6d6v:H, 4erd:A, 4erd:B, 7lmb:H, 7uy5:H, 7uy6:H
5 8gap:H 384 88 0.2947 0.0729 0.3182 0.002
6 2qpp:B 219 76 0.2105 0.0913 0.2632 0.068 2q32:A, 2q32:B, 2qpp:A, 2rgz:A, 2rgz:B, 5uc9:A, 5uc9:B, 5uc9:C, 5uc9:D
7 5t9c:E 263 54 0.1789 0.0646 0.3148 0.10 5t91:A, 5t9b:G
8 4rs2:B 183 62 0.2000 0.1038 0.3065 0.38 4rs2:A
9 2fy3:A 595 54 0.1474 0.0235 0.2593 1.4 7amd:A, 2fy4:A, 2fy5:A
10 3rj8:A 473 30 0.1158 0.0233 0.3667 2.1 3rja:A
11 5j35:A 309 44 0.1789 0.0550 0.3864 8.1 6h9v:B, 5j35:B, 5j3o:A, 5j3o:B, 5lfe:A, 5lfe:B, 4op7:A, 4op7:B, 4opo:A, 4opo:B, 8vrv:A, 4wze:A, 4wze:B, 4wzk:A, 4wzk:B, 4wzl:A, 4wzl:B, 4wzt:A, 4wzt:B, 4x05:A, 4x05:B, 4x05:C, 4x06:A, 4x06:B, 4x07:A, 4x07:B, 4x0c:A, 4x0c:B, 8y5v:A
12 8cbm:E 384 48 0.1684 0.0417 0.3333 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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