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BioLiP
>protein
HHHHHHSHMGKQASASYDSEEEEEGLPMSYDEKRQLSLDINRLPGEKLGRVVHIIQSREPSLRDSNPDEIEIDFETLKPT
TLRELERYVKSCLQKK

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7jq8:A 96 96 1.0000 1.0000 1.0000 3.68e-67 6bgg:B, 6bgh:A
2 6bnh:A 83 78 0.6979 0.8072 0.8590 1.63e-44 2n3k:A, 2ncz:A, 2nd0:A, 2nd1:A
3 8glp:LO 202 54 0.1875 0.0891 0.3333 1.6 7a01:w2, 8a3d:I, 5aj0:AO, 8b5l:O, 8b6c:O, 9bdl:AL16, 9bdn:AL16, 9bdp:AL16, 7bhp:LO, 8bhf:B1, 8bpo:N2, 8btk:BO, 7cpu:LO, 7cpv:LO, 4d5y:O, 4d67:O, 6d90:O, 6d9j:O, 9f1b:BO, 9f1c:BO, 9f1d:BO, 7f5s:LO, 8fkp:L7, 8fkq:L7, 8fkr:L7, 8fks:L7, 8fkt:L7, 8fku:L7, 8fkv:L7, 8fkw:L7, 8fkx:L7, 8fky:L7, 8fkz:L7, 8fl0:L7, 8fl2:L7, 8fl3:L7, 8fl4:L7, 8fl6:L7, 8fl7:L7, 8fl9:L7, 8fla:L7, 8flb:L7, 8flc:L7, 8fld:L7, 8fle:L7, 8flf:L7, 6frk:O, 6ftg:O, 6fti:O, 6ftj:O, 8g5y:LO, 8g5z:LO, 8g60:LO, 8g61:LO, 8g6j:LO, 6gz3:AO, 6gz4:AO, 6gz5:AO, 6hcf:O3, 6hcj:O3, 6hcm:O3, 6hcq:O3, 8idt:V, 8idy:V, 8ie3:V, 8ifd:2I, 8ife:2I, 8ine:V, 8inf:V, 8ink:V, 6ip5:2I, 6ip6:2I, 6ip8:2I, 8ipd:V, 8ipx:V, 8ipy:V, 8ir1:V, 8ir3:V, 3j7o:O, 3j7p:O, 3j7q:O, 3j7r:O, 3j92:O, 3jag:O, 3jah:O, 3jai:O, 3jaj:O, 3jan:O, 8jdj:T, 8jdk:T, 8jdl:T, 8jdm:T, 8k2c:LO, 5lks:LO, 6lqm:V, 6lsr:V, 6lss:V, 7ls1:I2, 7ls2:I2, 6lu8:V, 5lzs:O, 5lzt:O, 5lzu:O, 5lzv:O, 5lzw:O, 5lzx:O, 5lzy:O, 5lzz:O, 7mdz:O, 6mtb:O, 6mtc:O, 6mtd:O, 6mte:O, 7nfx:O, 7nwg:O3, 7nwh:O, 7nwi:O, 7o7y:BO, 7o7z:BO, 7o80:BO, 7o81:BO, 7obr:O, 8ohd:LO, 8oj0:LO, 8oj5:LO, 8oj8:LO, 6ole:P, 6olf:P, 6olg:AO, 6oli:P, 6olz:AO, 6om0:P, 6om7:P, 7ow7:I, 7oyc:O1, 7oyd:O, 8p2k:BO, 6p5i:AO, 6p5j:AO, 6p5k:AO, 6p5n:AO, 8q7z:BO, 8q87:BO, 8qfd:O, 7qgg:P, 8qoi:LO, 7qvp:LO, 7qvp:MO, 7qwq:O, 7qwr:O, 7qws:O, 6qzp:LO, 6r5q:O, 6r6g:O, 6r6p:O, 6r7q:O, 8rjb:O, 8rjc:O, 8rjd:O, 8scb:O, 6sgc:O2, 6swa:N, 5t2c:I, 6t59:O3, 7tm3:O, 7toq:AL16, 7tor:AL16, 7tut:O, 7ucj:O, 7uck:O, 4ug0:LO, 4ujc:BO, 4ujd:AO, 4uje:CO, 4v5z:Bj, 4v6x:CO, 6w6l:P, 6xa1:LO, 7xnx:LO, 7xny:LO, 8xsx:LO, 8xsy:LO, 8xsz:LO, 6y0g:LO, 8y0w:LO, 8y0x:LO, 6y2l:LO, 6y57:LO, 6y6x:LO, 8yoo:LO, 8yop:LO, 6z6l:LO, 6z6m:LO, 6z6n:LO, 7zjw:LR, 7zjx:LR, 6zm7:LO, 6zme:LO, 6zmi:LO, 6zmo:LO, 6zvk:w2
4 7oya:O1 204 54 0.1875 0.0882 0.3333 2.1 7oyb:O1
5 5z20:F 336 19 0.1042 0.0298 0.5263 4.2 5z20:A, 5z20:B, 5z20:C, 5z20:D, 5z20:E
6 5t4o:F 466 34 0.1354 0.0279 0.3824 7.8 8dbp:D, 8dbp:E, 8dbp:F, 8dbq:D, 8dbq:E, 8dbq:F, 8dbr:D, 8dbr:E, 8dbr:F, 8dbs:D, 8dbs:E, 8dbs:F, 8dbt:D, 8dbt:E, 8dbt:F, 8dbu:D, 8dbu:E, 8dbu:F, 8dbv:E, 8dbv:D, 8dbv:F, 8dbw:E, 8dbw:D, 8dbw:F, 3oaa:D, 3oaa:M, 3oaa:L, 3oaa:T, 3oaa:b, 6oqr:E, 6oqr:F, 6oqr:D, 6oqs:E, 6oqs:F, 6oqs:D, 6oqt:E, 6oqt:F, 6oqt:D, 6oqu:E, 6oqu:F, 6oqu:D, 6oqv:F, 6oqv:E, 6oqv:D, 6oqw:E, 6oqw:F, 6oqw:D, 6pqv:E, 6pqv:F, 6pqv:D, 5t4p:E, 5t4q:D, 6wnq:E, 6wnq:F, 6wnq:D, 6wnr:E, 6wnr:F, 6wnr:D
7 6fpx:A 177 30 0.1146 0.0621 0.3667 8.1 5dno:A, 5eim:A, 5eim:B, 6fpq:A, 6fpx:C, 6fpx:E
8 8i9p:LO 204 54 0.1771 0.0833 0.3148 9.1 8i9r:LO, 8i9t:LO, 8i9v:LO, 8i9w:LO, 8i9x:LO, 8i9y:LO, 8i9z:LO, 8ia0:LO, 7olc:LO, 7old:LO, 8oo0:LO, 8pv1:LO, 8pv2:LO, 8pv3:LO, 8pv4:LO, 8pv5:LO, 8pv6:LO, 8pv7:LO, 8pv8:LO, 8pvk:LO, 8pvl:LO, 7r81:Q1, 7z3n:LO, 7z3o:LO

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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