Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HHHHHHMSPNLPGQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEIEMHIA
MRTG

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5wwx:A 84 84 1.0000 1.0000 1.0000 1.61e-57
2 5www:A 94 50 0.2857 0.2553 0.4800 1.28e-09
3 1j4w:A 145 65 0.2857 0.1655 0.3692 8.89e-05 6y2c:A
4 1j4w:A 145 66 0.2500 0.1448 0.3182 0.13 6y2c:A
5 2anr:A 155 64 0.2500 0.1355 0.3281 0.002 2ann:A
6 7yey:A 162 37 0.1667 0.0864 0.3784 0.008 7vkl:A
7 5elt:B 152 52 0.1786 0.0987 0.2885 0.047 5elr:C, 5els:A, 5els:C, 5elt:A, 5emo:B, 5emo:A
8 8coo:A 191 39 0.1786 0.0785 0.3846 0.057 2n8l:A, 2n8m:A
9 4wal:A 127 29 0.1190 0.0787 0.3448 0.071 4wan:A, 4wan:C, 4wan:E, 4wan:G
10 6y2c:B 84 62 0.2381 0.2381 0.3226 0.080
11 1k1g:A 122 24 0.1190 0.0820 0.4167 0.10
12 3vke:A 76 70 0.2143 0.2368 0.2571 0.20 2axy:B, 2axy:D, 2pqu:C, 2pqu:B, 2py9:B, 2py9:C, 3vke:B, 3vke:C, 3vke:D, 1ztg:A, 1ztg:D, 1ztg:B, 1ztg:C
13 2p2r:A 73 73 0.2262 0.2603 0.2603 0.52
14 4b8t:A 106 58 0.2143 0.1698 0.3103 1.2
15 7mq8:NY 274 38 0.1310 0.0401 0.2895 1.5 7mq9:NY
16 2qag:C 224 64 0.2381 0.0893 0.3125 1.6
17 3asq:A 311 33 0.1190 0.0322 0.3030 1.6 3asq:B, 3asr:A, 3asr:B, 3ass:A, 3ass:B, 3ast:A, 3ast:B
18 8w4g:A 876 47 0.1786 0.0171 0.3191 2.1 8w4i:A, 8w4n:A, 8x8g:A
19 5idy:B 264 16 0.0952 0.0303 0.5000 2.6 5idy:A, 5vps:A
20 4hz7:A 441 27 0.1310 0.0249 0.4074 4.0 4hz8:A
21 8er0:A 371 26 0.1310 0.0296 0.4231 8.6 8er0:B, 8er1:A, 6wg9:A, 6wg9:B
22 6en3:A 934 47 0.1667 0.0150 0.2979 8.6 8a49:C, 4nuy:A, 4nuz:A
23 6bxg:A 98 50 0.2143 0.1837 0.3600 8.9
24 6zqb:JO 236 21 0.1071 0.0381 0.4286 9.1 7ajt:JO, 6zqc:JO

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218