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BioLiP
>protein
HHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELL
QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS
KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL
RNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMSMLKNLIHSKHKMIAMGS
AA

The query sequence (length=322) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5iz8:A 343 324 0.9969 0.9359 0.9907 0.0 5b6g:A, 7f6m:A, 7f7o:A, 8gsj:A, 5iz6:A, 5iz8:B, 5iz9:A, 5iza:A, 3nmx:A, 3nmx:B, 3nmx:C, 3qhe:A, 3qhe:C, 4yje:A, 4yjl:A, 4yjl:C, 4yjl:D, 4yjl:E, 4yjl:B, 4yjl:F, 4yk6:A, 5z8h:A
2 6s9o:F 343 284 0.2267 0.2128 0.2570 0.038 5aei:A, 5aei:B, 5aei:C, 5mfd:A, 5mfd:C, 5mfd:E, 5mfd:I, 5mfd:G, 5mfd:J, 5mfd:K, 5mfd:L, 5mfe:A, 5mfe:B, 5mfe:C, 5mfe:D, 5mff:A, 5mff:B, 5mff:C, 5mff:D, 5mfg:A, 5mfh:A, 5mfh:B, 5mfh:C, 5mfh:D, 5mfl:A, 5mfl:B, 5mfl:C, 5mfm:A, 5mfm:B, 5mfm:C, 5mfm:E, 5mfm:D, 5mfm:F, 5mfn:B, 5mfn:A, 5mfo:A, 5mfo:C, 5mfo:E, 6s9l:A, 6s9l:B, 6s9m:A, 6s9m:E, 6s9m:B, 6s9m:C, 6s9m:D, 6s9m:F, 6s9n:A, 6s9n:E, 6s9n:B, 6s9n:C, 6s9n:F, 6s9n:D, 6s9o:A, 6s9o:B, 6s9o:C, 6s9o:D, 6s9o:E
3 6kbn:C 504 170 0.1366 0.0873 0.2588 0.10 6kbm:A, 6kbn:A
4 3l6x:A 434 162 0.1211 0.0899 0.2407 0.27 3l6y:A, 3l6y:C, 3l6y:E
5 3l6x:A 434 88 0.0714 0.0530 0.2614 9.9 3l6y:A, 3l6y:C, 3l6y:E
6 4rxh:B 421 252 0.1739 0.1330 0.2222 0.41 5vqi:B
7 1qz7:A 524 207 0.1553 0.0954 0.2415 0.70 7afw:A, 7ar4:AAA, 4djs:A, 8ei9:A, 8eia:A, 8eib:A, 8eic:A, 2gl7:A, 2gl7:D, 1i7w:A, 1i7w:C, 1jpp:A, 1jpp:B, 1jpw:A, 1jpw:B, 1jpw:C, 3ouw:A, 8ru3:A, 8ru4:A, 8ru4:B, 3sl9:A, 3sl9:E, 3sl9:B, 3sl9:G, 1t08:A, 7uwi:A, 7uwo:A, 8y0p:A, 8y0p:B, 8z10:A
8 7qiw:N 204 41 0.0435 0.0686 0.3415 8.9 8azw:D, 8b2l:D3, 7qiz:N
9 6qhd:B 532 115 0.1025 0.0620 0.2870 9.7
10 2m13:A 65 29 0.0280 0.1385 0.3103 9.9 2mke:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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