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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HHHHHAMALTDRGMTYDLDPKDGSSAATKPVLEVTKKVFDTAADAAGQTVTVEFKVSGAEGKYATTGYHIYWDERLEVVA
TKTGAYAKKGAALEDSSLAKAENNGNGVFVASGADDDFGADGVMWTVELKVPADAKAGDVYPIDVAYQWDPSKGDLFTDN
KDSAQGKLMQAYFFTQGIKSSSNPSTDEYLVKANATYADGYIAIKAGEP

The query sequence (length=209) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4iu2:A 209 209 1.0000 1.0000 1.0000 1.66e-153 8ajy:A, 8ajy:C, 4iu3:A
2 1inp:A 400 124 0.1627 0.0850 0.2742 0.021
3 3in6:A 147 66 0.1053 0.1497 0.3333 0.15 3in6:B
4 7kir:A 326 124 0.1579 0.1012 0.2661 0.20 7kio:A
5 8pu1:B 191 43 0.0670 0.0733 0.3256 1.9 8pu4:A, 8pu4:B, 8pu4:C
6 5xsf:A 209 141 0.1722 0.1722 0.2553 3.6
7 4imm:A 331 81 0.1148 0.0725 0.2963 8.4 4imm:B
8 3gyd:B 180 38 0.0670 0.0778 0.3684 9.4 3gyd:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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