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BioLiP
>protein
HHHHAMWKCKKCGCDRFYQDITGGISEVLEMDKDGEVLDEIDDVEYGDFSCAKCDNSSSKIQEIAYWDEI

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7xmw:B 72 70 1.0000 0.9722 1.0000 1.97e-47 7xmw:A
2 6o1x:A 354 40 0.2000 0.0395 0.3500 0.041 6o1w:A, 6o1w:B, 6o1y:A
3 6fbz:A 191 44 0.1857 0.0681 0.2955 1.0
4 4oht:A 455 31 0.1286 0.0198 0.2903 2.3 4oht:B, 4ywu:A, 4ywu:B, 4ywv:A, 4ywv:B
5 5kj5:B 484 47 0.1571 0.0227 0.2340 3.3 4i1w:A, 4i1w:B, 4i1w:C, 4i1w:D, 4i25:A, 4i25:B, 4i25:C, 4i25:D, 4i2r:A, 4i2r:B, 4i2r:C, 4i2r:D, 5kj5:A, 5kj5:D, 5kj5:C, 5klk:A, 5klk:B, 5klk:D, 5klk:C, 5kll:A, 5kll:B, 5kll:C, 5kll:D, 5klm:A, 5klm:B, 5klm:C, 5klm:D, 5kln:A, 5kln:D, 5kln:B, 5kln:C, 5klo:A, 5klo:B, 5klo:C, 5klo:D, 4npi:A, 4npi:B, 4npi:C, 4npi:D, 4oe2:A, 4oe2:B, 4oe2:C, 4oe2:D, 4ou2:A, 4ou2:B, 4ou2:C, 4ou2:D, 4oub:A, 4oub:B, 4oub:C, 4oub:D
6 8q3b:A 1423 36 0.1571 0.0077 0.3056 4.1 8q3k:A
7 5x2n:C 433 72 0.2857 0.0462 0.2778 7.0 5x2m:A, 5x2m:C, 5x2n:A, 5x2o:A, 5x2o:C, 5x2p:A, 5x2p:C, 5x2q:A, 5x2q:C
8 1umb:A 362 45 0.2000 0.0387 0.3111 9.5 1umb:C, 1umc:A, 1umc:C, 1umd:A, 1umd:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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