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BioLiP
>protein
HHGSMETACGDSKDNDGDGLVDCMDPDCCLQPLCHINPLCLG

The query sequence (length=42) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7bam:A 1904 38 0.9048 0.0200 1.0000 5.19e-26 7bam:B, 7ban:A, 7ban:B, 7bao:A, 7plp:A, 7plp:B
2 5ve9:B 91 26 0.2619 0.1209 0.4231 0.36 5ve9:A
3 6pq1:A 320 18 0.2143 0.0281 0.5000 2.9
4 6fie:B 255 24 0.2381 0.0392 0.4167 3.0
5 1qb7:A 236 20 0.2143 0.0381 0.4500 7.7 1qb8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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