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BioLiP
>protein
HGYIESPPSRQQHCGAEQKPDNPSSAKCDEAFANYRAAGGQNSHWYNFMSVVAHHEGRKVVKGTEHVCGFDGETWNPAPY
DTPANWPVTSFNSGQQTFVWDISYGPHFSDTEELVFYITKPGFSFDPTRELTWADFEDQPFCDESIVPGDFSTNSAVEAD
MANSHINVTCNVPSRSGRHVIFAEWGRNEHTYERFFSCVDVDFGWSHP

The query sequence (length=208) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rw7:A 208 208 1.0000 1.0000 1.0000 6.19e-158
2 7zjb:B 181 206 0.2788 0.3204 0.2816 2.67e-13
3 5fjq:A 180 210 0.2837 0.3278 0.2810 9.18e-12 5fjq:B, 5fjq:C
4 6if7:A 183 210 0.2788 0.3169 0.2762 1.07e-11
5 8rry:A 170 204 0.2596 0.3176 0.2647 1.77e-11 8rry:B
6 5wsz:A 169 213 0.2788 0.3432 0.2723 2.63e-09 5wsz:B, 5wsz:C, 5wsz:D
7 4oy7:A 196 218 0.3077 0.3265 0.2936 5.86e-09 4oy7:B, 4oy7:C, 4oy7:D, 4oy7:E, 4oy7:F, 4oy7:G, 4oy7:H
8 6t5z:A 174 202 0.2452 0.2931 0.2525 2.57e-07 6t5z:B, 6t5z:C
9 8gul:B 361 127 0.1971 0.1136 0.3228 2.57e-07
10 8gul:A 464 127 0.1971 0.0884 0.3228 3.67e-07
11 5opf:A 194 214 0.2596 0.2784 0.2523 1.25e-06
12 8cc3:A 180 124 0.1827 0.2111 0.3065 1.70e-06 8cc3:B, 8cc5:A, 8cc5:B, 7pb6:A, 7pb6:B, 7pb7:A, 7pb7:B
13 6twe:A 172 211 0.2788 0.3372 0.2749 1.47e-05
14 5uiz:A 186 93 0.1538 0.1720 0.3441 7.94e-05
15 4alc:A 166 138 0.1731 0.2169 0.2609 1.66e-04 4ale:A, 4alq:A, 4alr:A, 4als:A, 4alt:A
16 4oy6:A 186 92 0.1298 0.1452 0.2935 4.53e-04 4oy8:A
17 5ftz:A 172 120 0.1731 0.2093 0.3000 5.92e-04
18 4yn2:A 281 92 0.1250 0.0925 0.2826 0.001
19 7okr:AAA 192 103 0.1250 0.1354 0.2524 0.007
20 4x27:A 307 242 0.2500 0.1694 0.2149 0.019 4x29:A
21 5a0y:A 548 178 0.2163 0.0821 0.2528 0.19 5a0y:D, 5a8k:A, 5a8k:D, 7b2h:A, 7b2h:D, 5g0r:A, 5g0r:D, 1hbm:A, 1hbm:D, 1hbn:A, 1hbn:D, 1hbo:A, 1hbo:D, 1hbu:A, 1hbu:D, 3m1v:A, 3m1v:D, 3m2r:A, 3m2r:D, 3m2u:A, 3m2u:D, 3m2v:A, 3m2v:D, 3m30:A, 3m30:D, 3m32:A, 3m32:D, 1mro:A, 1mro:D, 3pot:A, 3pot:D, 7suc:A, 7suc:a, 7sxm:A, 7sxm:D
22 7ya3:B 384 90 0.1154 0.0625 0.2667 2.0 7ya3:A, 7ya4:A, 7ya4:B
23 7trw:A 213 104 0.1298 0.1268 0.2596 3.5
24 4gjw:B 96 34 0.0433 0.0938 0.2647 4.0
25 4gri:B 485 136 0.1635 0.0701 0.2500 4.1 4gri:A
26 6egv:A 243 65 0.1010 0.0864 0.3231 9.5 6egx:A, 6eh1:A, 6eiw:A, 5lsf:A, 5oyp:A
27 4iou:B 179 25 0.0625 0.0726 0.5200 10.0 5hx5:A, 5hx5:B, 4iou:A, 4iou:C, 4iou:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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