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BioLiP
>protein
HGWVTDPPSRQALCASGETSFDCGQISYEPQSVEAPKGATTCSGGNEAFAILDDNSKPWPTTEIASTVDLTWKLTAPHNT
STWEYFVDGQLHQTFDQKGQQPPTSLTHTLTDLPTGEHTILARWNVSNTNNAFYNCMDVVVS

The query sequence (length=142) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5aa7:A 142 142 1.0000 1.0000 1.0000 2.88e-105 5aa7:B, 5vg0:A, 5vg0:B, 5vg1:A, 5vg1:B
2 5ftz:A 172 171 0.4718 0.3895 0.3918 3.28e-27
3 6twe:A 172 168 0.4155 0.3430 0.3512 7.29e-22
4 6t5z:A 174 174 0.4085 0.3333 0.3333 2.98e-21 6t5z:B, 6t5z:C
5 5l2v:A 166 162 0.3732 0.3193 0.3272 3.97e-21 5l2v:B
6 5wsz:A 169 166 0.4014 0.3373 0.3434 8.11e-20 5wsz:B, 5wsz:C, 5wsz:D
7 4alc:A 166 165 0.3803 0.3253 0.3273 1.62e-19 4ale:A, 4alq:A, 4alr:A, 4als:A, 4alt:A
8 8rry:A 170 171 0.3873 0.3235 0.3216 1.50e-17 8rry:B
9 5iju:A 178 176 0.3732 0.2978 0.3011 1.83e-16 5iju:B, 2yox:A, 2yox:B, 2yoy:A, 2yoy:B
10 8gul:B 361 177 0.3732 0.1468 0.2994 1.04e-11
11 8gul:A 464 177 0.3732 0.1142 0.2994 1.51e-11
12 8cc3:A 180 163 0.3169 0.2500 0.2761 3.12e-09 8cc3:B, 8cc5:A, 8cc5:B, 7pb6:A, 7pb6:B, 7pb7:A, 7pb7:B
13 7zjb:B 181 116 0.2183 0.1713 0.2672 2.58e-04
14 7okr:AAA 192 120 0.2042 0.1510 0.2417 0.007
15 5fjq:A 180 180 0.2887 0.2278 0.2278 0.008 5fjq:B, 5fjq:C
16 5uiz:A 186 117 0.2113 0.1613 0.2564 0.049
17 4oy7:A 196 128 0.2465 0.1786 0.2734 0.19 4oy7:B, 4oy7:C, 4oy7:D, 4oy7:E, 4oy7:F, 4oy7:G, 4oy7:H
18 6if7:A 183 181 0.2887 0.2240 0.2265 0.20
19 3eey:A 195 109 0.2183 0.1590 0.2844 0.89 3eey:B, 3eey:C, 3eey:D, 3eey:E, 3eey:F, 3eey:H, 3eey:I, 3eey:J
20 1nt2:A 209 34 0.0915 0.0622 0.3824 2.1
21 5jqs:A 251 22 0.0704 0.0398 0.4545 3.2
22 4oy6:A 186 119 0.2254 0.1720 0.2689 4.8 4oy8:A
23 3ign:A 166 42 0.1056 0.0904 0.3571 7.5
24 5opf:A 194 25 0.0634 0.0464 0.3600 7.9
25 4bed:A 1664 80 0.1408 0.0120 0.2500 9.9 4bed:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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