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BioLiP
>protein
HGRIELIIGPMFAGKTTELMRRVQRHKHAQRSCYIIKYTGDTRHDQRALTANVSVSNLHDVGDEWRKYDVIAVDEGQFFP
DVAAFCSKAADSGKVVIVSALDADYLQEPFEEICLLVSRADSVVKLSAVCMECHNRKASFTYRTVKSDERKLVGGSDMYM
SVCRSCYETKRNM

The query sequence (length=173) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5fuv:A 173 173 1.0000 1.0000 1.0000 2.70e-130 5fuv:B, 5fuw:A, 5fuw:B, 5fux:A, 5fux:B, 5fuy:A, 5fuy:B, 5fuy:C, 5fuy:D, 5fuy:E, 5fuy:F
2 4uxh:A 173 170 0.5780 0.5780 0.5882 4.35e-73 4uxh:B, 4uxi:A, 4uxi:B, 4uxj:A, 4uxj:B, 4uxj:C, 4uxj:D, 4uxj:E, 4uxj:F, 4uxj:G, 4uxj:H
3 2j87:D 171 171 0.4740 0.4795 0.4795 1.76e-53 2j87:A, 2j87:B, 2j87:C
4 1w4r:A 174 173 0.4971 0.4943 0.4971 2.02e-53 2orv:A, 2orv:B, 1w4r:B, 1w4r:C, 1w4r:D, 1w4r:E, 1w4r:F, 1w4r:G, 1w4r:H, 2wvj:A, 2wvj:B, 2wvj:C, 2wvj:D, 2wvj:E, 2wvj:F, 2wvj:G, 2wvj:H, 1xbt:A, 1xbt:B, 1xbt:C, 1xbt:D, 1xbt:E, 1xbt:F, 1xbt:G, 1xbt:H
5 2orw:B 173 174 0.3584 0.3584 0.3563 1.48e-27 2orw:A, 2qpo:A, 2qpo:B, 2qpo:C, 2qpo:D, 2qq0:A, 2qq0:B, 2qqe:A, 2qqe:B
6 2ja1:A 193 182 0.3757 0.3368 0.3571 1.24e-23 2j9r:A
7 2uz3:B 207 185 0.3757 0.3140 0.3514 1.94e-23 2b8t:A, 2b8t:B, 2b8t:C, 2b8t:D, 2uz3:A, 2uz3:C, 2uz3:D
8 1xx6:A 178 174 0.3295 0.3202 0.3276 4.23e-23 1xx6:B
9 3e2i:A 175 175 0.3584 0.3543 0.3543 2.76e-22
10 7kb1:A 428 109 0.1618 0.0654 0.2569 0.36 7kb1:B, 7kb1:C, 7kb1:D
11 5n1u:A 170 62 0.1098 0.1118 0.3065 0.91 5n1u:B, 5n1w:B, 5n1w:A, 5n22:A, 5n22:C, 5n22:D, 5n22:B
12 4rdv:B 451 64 0.0867 0.0333 0.2344 1.3 3mdu:A, 3mdw:A, 3mdw:B, 3mdw:C, 3mdw:D, 4rdv:A, 4rdv:C, 4rdv:D, 4rdw:A, 4rzb:A, 4rzb:B
13 3ucp:A 800 48 0.0925 0.0200 0.3333 2.4 3ufh:A, 3ufk:A
14 2ood:A 463 35 0.0809 0.0302 0.4000 2.9
15 7sh1:A 626 34 0.0694 0.0192 0.3529 5.6 7sh1:B
16 5gm8:B 173 28 0.0636 0.0636 0.3929 6.2 5gm8:A, 5gm8:C, 5gm8:D
17 3cmv:G 1167 111 0.1792 0.0266 0.2793 8.7 3cmv:B, 3cmv:E
18 3cmv:A 1190 111 0.1792 0.0261 0.2793 8.7 3cmv:C, 3cmv:D, 3cmv:F, 3cmv:H, 1n03:A, 1n03:B, 1n03:C, 1n03:D, 1n03:E, 1n03:F, 1n03:G, 1rea:A, 1u94:A, 1u99:A, 1xms:A
19 3cmv:A 1190 111 0.1792 0.0261 0.2793 8.7 3cmv:C, 3cmv:D, 3cmv:F, 3cmv:H, 1n03:A, 1n03:B, 1n03:C, 1n03:D, 1n03:E, 1n03:F, 1n03:G, 1rea:A, 1u94:A, 1u99:A, 1xms:A
20 3cmt:D 1609 111 0.1792 0.0193 0.2793 8.9 3cmw:C, 3cmx:A, 3cmx:D
21 3cmt:D 1609 111 0.1792 0.0193 0.2793 8.9 3cmw:C, 3cmx:A, 3cmx:D
22 3cmt:D 1609 111 0.1792 0.0193 0.2793 8.9 3cmw:C, 3cmx:A, 3cmx:D
23 3cmt:D 1609 111 0.1792 0.0193 0.2793 8.9 3cmw:C, 3cmx:A, 3cmx:D
24 3cmu:A 1937 111 0.1792 0.0160 0.2793 8.9 3cmt:A, 3cmw:A, 8gms:F, 8gms:G, 8gmt:F, 8gmt:G, 8gmu:F, 8gmu:G, 7jy6:A, 7jy6:B, 7jy6:C, 7jy6:D, 7jy6:E, 7jy6:F, 7jy6:G, 7jy6:H, 7jy6:I, 7jy7:A, 7jy7:B, 7jy7:C, 7jy7:D, 7jy7:E, 7jy7:F, 7jy7:G, 7jy7:H, 7jy7:I, 7jy8:A, 7jy8:B, 7jy8:C, 7jy8:D, 7jy8:E, 7jy8:F, 7jy8:G, 7jy8:H, 7jy8:I, 7jy9:A, 7jy9:C, 7jy9:D, 7jy9:G, 7jy9:E, 7jy9:B, 7jy9:F, 7jy9:H, 7jy9:I, 8trg:A, 8trg:B, 8trg:C, 8trg:D, 8trg:E, 8trg:F, 8trg:G, 8trg:H, 4twz:A, 7ywa:F, 7ywa:G
25 3cmu:A 1937 111 0.1792 0.0160 0.2793 8.9 3cmt:A, 3cmw:A, 8gms:F, 8gms:G, 8gmt:F, 8gmt:G, 8gmu:F, 8gmu:G, 7jy6:A, 7jy6:B, 7jy6:C, 7jy6:D, 7jy6:E, 7jy6:F, 7jy6:G, 7jy6:H, 7jy6:I, 7jy7:A, 7jy7:B, 7jy7:C, 7jy7:D, 7jy7:E, 7jy7:F, 7jy7:G, 7jy7:H, 7jy7:I, 7jy8:A, 7jy8:B, 7jy8:C, 7jy8:D, 7jy8:E, 7jy8:F, 7jy8:G, 7jy8:H, 7jy8:I, 7jy9:A, 7jy9:C, 7jy9:D, 7jy9:G, 7jy9:E, 7jy9:B, 7jy9:F, 7jy9:H, 7jy9:I, 8trg:A, 8trg:B, 8trg:C, 8trg:D, 8trg:E, 8trg:F, 8trg:G, 8trg:H, 4twz:A, 7ywa:F, 7ywa:G
26 3cmu:A 1937 111 0.1792 0.0160 0.2793 8.9 3cmt:A, 3cmw:A, 8gms:F, 8gms:G, 8gmt:F, 8gmt:G, 8gmu:F, 8gmu:G, 7jy6:A, 7jy6:B, 7jy6:C, 7jy6:D, 7jy6:E, 7jy6:F, 7jy6:G, 7jy6:H, 7jy6:I, 7jy7:A, 7jy7:B, 7jy7:C, 7jy7:D, 7jy7:E, 7jy7:F, 7jy7:G, 7jy7:H, 7jy7:I, 7jy8:A, 7jy8:B, 7jy8:C, 7jy8:D, 7jy8:E, 7jy8:F, 7jy8:G, 7jy8:H, 7jy8:I, 7jy9:A, 7jy9:C, 7jy9:D, 7jy9:G, 7jy9:E, 7jy9:B, 7jy9:F, 7jy9:H, 7jy9:I, 8trg:A, 8trg:B, 8trg:C, 8trg:D, 8trg:E, 8trg:F, 8trg:G, 8trg:H, 4twz:A, 7ywa:F, 7ywa:G
27 3cmu:A 1937 111 0.1792 0.0160 0.2793 8.9 3cmt:A, 3cmw:A, 8gms:F, 8gms:G, 8gmt:F, 8gmt:G, 8gmu:F, 8gmu:G, 7jy6:A, 7jy6:B, 7jy6:C, 7jy6:D, 7jy6:E, 7jy6:F, 7jy6:G, 7jy6:H, 7jy6:I, 7jy7:A, 7jy7:B, 7jy7:C, 7jy7:D, 7jy7:E, 7jy7:F, 7jy7:G, 7jy7:H, 7jy7:I, 7jy8:A, 7jy8:B, 7jy8:C, 7jy8:D, 7jy8:E, 7jy8:F, 7jy8:G, 7jy8:H, 7jy8:I, 7jy9:A, 7jy9:C, 7jy9:D, 7jy9:G, 7jy9:E, 7jy9:B, 7jy9:F, 7jy9:H, 7jy9:I, 8trg:A, 8trg:B, 8trg:C, 8trg:D, 8trg:E, 8trg:F, 8trg:G, 8trg:H, 4twz:A, 7ywa:F, 7ywa:G
28 3cmu:A 1937 111 0.1792 0.0160 0.2793 8.9 3cmt:A, 3cmw:A, 8gms:F, 8gms:G, 8gmt:F, 8gmt:G, 8gmu:F, 8gmu:G, 7jy6:A, 7jy6:B, 7jy6:C, 7jy6:D, 7jy6:E, 7jy6:F, 7jy6:G, 7jy6:H, 7jy6:I, 7jy7:A, 7jy7:B, 7jy7:C, 7jy7:D, 7jy7:E, 7jy7:F, 7jy7:G, 7jy7:H, 7jy7:I, 7jy8:A, 7jy8:B, 7jy8:C, 7jy8:D, 7jy8:E, 7jy8:F, 7jy8:G, 7jy8:H, 7jy8:I, 7jy9:A, 7jy9:C, 7jy9:D, 7jy9:G, 7jy9:E, 7jy9:B, 7jy9:F, 7jy9:H, 7jy9:I, 8trg:A, 8trg:B, 8trg:C, 8trg:D, 8trg:E, 8trg:F, 8trg:G, 8trg:H, 4twz:A, 7ywa:F, 7ywa:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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