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BioLiP
>protein
HGKRLFIIKPSGFYDRRFLKLMRFYILLTGIPVAIGITLVNVFIGEAELADIPEGYVPEHWEYFKHPISRWIARTFYDGP
EKNYEKTMAILQIEAEKAELRLKELEVRRLMRARGDGPWYQYPTIDKALIDHSPKTTPDN

The query sequence (length=140) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7v2d:a 140 140 1.0000 1.0000 1.0000 4.93e-102 5lnk:W, 7r41:h, 7r42:h, 7r44:h, 7r45:h, 7r47:h, 7r48:h, 7r4c:h, 7r4d:h, 7r4g:h, 8ud1:1h, 8ugh:1h, 8ugi:1h, 8ugj:1h, 8ugn:1h, 8ugn:5h, 8ugr:1h, 7v2e:a, 7v2f:a, 7v2h:a, 7v2k:a, 7v2r:a, 7v30:a, 7v31:a, 7v32:a, 7v33:a, 7v3m:a, 7vbl:a, 7vbp:a, 7vc0:a, 7vwl:a, 7vxs:a, 7vy1:a, 7vye:a, 7vyg:a, 7vyi:a, 7vys:a, 7vz8:a, 7vzv:a, 7vzw:a, 7w0h:a, 7w0r:a, 7w0y:a, 7w1o:a, 7w1p:a, 7w1t:a, 7w1u:a, 7w1v:a, 7w1z:a, 7w20:a, 7w2l:a, 7w2r:a, 7w2u:a, 7w2y:a, 7w4c:a, 7w4d:a, 7w4e:a, 7w4f:a, 7w4k:a, 7w4l:a, 7w4m:a, 6zkm:W, 6zkn:W, 6zku:W, 6zkv:W
2 8iaq:h 138 138 0.8143 0.8261 0.8261 4.66e-86 8ib6:h, 8ibb:h, 8ibf:h, 8ic4:h
3 5xtc:a 138 138 0.8286 0.8406 0.8406 1.01e-84 5xtd:a, 5xth:a, 5xti:a, 5xti:Ba
4 1ct9:A 497 51 0.1286 0.0362 0.3529 0.19 1ct9:B, 1ct9:C, 1ct9:D
5 7v2c:m 175 119 0.2214 0.1771 0.2605 0.62 7v2e:m, 7v2h:m, 7v2r:m, 7v33:m, 7vbl:m, 7vc0:m, 7vxs:m, 7vy9:m, 7vys:m, 7vzv:m, 7vzw:m, 7w0r:m, 7w0y:m, 7w1t:m, 7w1v:m, 7w1z:m, 7w20:m, 7w2r:m, 7w2u:m, 7w2y:m, 7w4c:m, 7w4d:m, 7w4e:m, 7w4f:m, 7w4g:m
6 1j70:A 512 47 0.1214 0.0332 0.3617 1.5 1g8f:A, 1g8g:A, 1g8g:B, 1g8h:A, 1g8h:B, 1j70:B, 1j70:C, 1jec:A, 1jed:A, 1jed:B, 1jee:A, 1jee:B, 1r6x:A
7 5lnk:J 175 119 0.2286 0.1829 0.2689 3.3
8 8qlp:E 419 52 0.1214 0.0406 0.3269 5.1 8qlp:A, 8qlp:I, 8qlp:M
9 7k1n:A 3634 78 0.1286 0.0050 0.2308 6.6 7z88:A
10 8hw1:A 241 48 0.1071 0.0622 0.3125 6.7 8hw1:K, 8hw1:B, 8hw1:C, 8hw1:D, 8hw1:E, 8hw1:F, 8hw1:G, 8hw1:H, 8hw1:I, 8hw1:J
11 7k0y:A 3669 78 0.1286 0.0049 0.2308 6.7
12 4w75:B 187 71 0.1643 0.1230 0.3239 8.0
13 6wkd:A 280 37 0.1000 0.0500 0.3784 8.6 6wkf:A, 6wkh:A
14 2ynp:A 601 46 0.0857 0.0200 0.2609 8.9 8ens:A, 8enw:A, 8enw:B, 8enx:A, 8hqt:A, 8hqv:A, 8hqx:A, 4j73:A, 4j77:A, 4j77:B, 4j78:A, 4j79:A, 4j81:B, 4j81:A, 4j82:A, 4j82:B, 4j84:A, 4j84:B, 4j86:A, 4j86:B, 2ynn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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