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BioLiP
>protein
HFFEGTEKLLEVWFSRQQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSE

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1jl0:B 311 58 0.9828 0.1833 0.9828 1.08e-33 3dz2:B, 3dz2:A, 3dz3:B, 3dz3:A, 3dz4:B, 3dz4:A, 3dz5:B, 3dz5:A, 3dz6:B, 3dz6:A, 3dz7:B, 3dz7:A, 3ep3:A, 3ep4:A, 3ep5:A, 3ep6:B, 3ep6:A, 3ep7:B, 3ep7:A, 3ep8:B, 3ep8:A, 3ep9:A, 3epa:A, 3epb:A, 3h0v:B, 3h0v:A, 3h0w:B, 3h0w:A, 1i72:B, 1i72:A, 1i79:B, 1i79:A, 1i7b:B, 1i7b:A, 1i7c:A, 1i7c:B, 1i7m:A, 1i7m:B, 1i7m:C, 1i7m:D, 1jl0:A
2 3fsr:A 352 14 0.1552 0.0256 0.6429 4.9 3fsr:C, 3ftn:A, 3ftn:B, 3ftn:C, 3ftn:D
3 6sch:C 355 14 0.1552 0.0254 0.6429 5.0 2b83:A, 2b83:B, 2b83:C, 2b83:D, 1jqb:A, 1jqb:B, 1jqb:C, 1jqb:D, 1kev:A, 1kev:B, 1kev:C, 1kev:D, 1ped:A, 1ped:B, 1ped:C, 1ped:D, 6sch:A, 6sch:B, 6sch:D
4 3fpc:A 352 15 0.1552 0.0256 0.6000 5.6 3fpc:B, 3fpc:C, 3fpc:D
5 2oui:A 360 15 0.1552 0.0250 0.6000 5.6 2oui:B, 2oui:C, 2oui:D, 1y9a:A, 1y9a:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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