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BioLiP
>protein
HFFEGTEKLLEVWFSRGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSE

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1jl0:B 311 57 1.0000 0.1801 0.9825 6.86e-33 3dz2:B, 3dz2:A, 3dz3:B, 3dz3:A, 3dz4:B, 3dz4:A, 3dz5:B, 3dz5:A, 3dz6:B, 3dz6:A, 3dz7:B, 3dz7:A, 3ep3:A, 3ep4:A, 3ep5:A, 3ep6:B, 3ep6:A, 3ep7:B, 3ep7:A, 3ep8:B, 3ep8:A, 3ep9:A, 3epa:A, 3epb:A, 3h0v:B, 3h0v:A, 3h0w:B, 3h0w:A, 1i72:B, 1i72:A, 1i79:B, 1i79:A, 1i7b:B, 1i7b:A, 1i7c:A, 1i7c:B, 1i7m:A, 1i7m:B, 1i7m:C, 1i7m:D, 1jl0:A
2 1b2y:A 496 34 0.2143 0.0242 0.3529 3.3 3bai:A, 3baj:A, 3bak:A, 3baw:A, 3bax:A, 3bay:A, 3blk:A, 3blp:X, 1bsi:A, 1c8q:A, 1cpu:A, 2cpu:A, 3cpu:A, 3dhp:A, 5e0f:A, 5emy:A, 4gqq:A, 4gqr:A, 1hny:A, 3ij7:A, 3ij8:A, 3ij9:A, 1jxj:A, 1jxk:A, 1kb3:A, 1kbb:A, 1kbk:A, 5kez:A, 1kgu:A, 1kgw:A, 1kgx:A, 1mfu:A, 1mfv:A, 1nm9:A, 6obx:A, 6ocn:A, 3old:A, 3ole:A, 3olg:A, 3oli:A, 1q4n:X, 2qmk:A, 2qv4:A, 1smd:A, 5td4:A, 1u2y:A, 1u30:A, 1u33:A, 5u3a:A, 5va9:A, 5va9:B, 4w93:A, 4x9y:A, 1xcw:A, 1xcx:A, 1xd0:A, 1xd1:A, 1xgz:A, 1xh0:A, 1xh1:A, 1xh2:A, 1xv8:A, 1xv8:B, 1z32:X, 6z8l:A
3 4v8l:D 2822 22 0.2143 0.0043 0.5455 4.2 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
4 3fpc:A 352 15 0.1607 0.0256 0.6000 5.2 3fpc:B, 3fpc:C, 3fpc:D
5 2oui:A 360 15 0.1607 0.0250 0.6000 5.2 2oui:B, 2oui:C, 2oui:D, 1y9a:A, 1y9a:C
6 3fsr:A 352 13 0.1607 0.0256 0.6923 5.4 3fsr:C, 3ftn:A, 3ftn:B, 3ftn:C, 3ftn:D
7 6sch:C 355 13 0.1607 0.0254 0.6923 5.4 2b83:A, 2b83:B, 2b83:C, 2b83:D, 1jqb:A, 1jqb:B, 1jqb:C, 1jqb:D, 1kev:A, 1kev:B, 1kev:C, 1kev:D, 1ped:A, 1ped:B, 1ped:C, 1ped:D, 6sch:A, 6sch:B, 6sch:D
8 7ucw:B 281 30 0.1964 0.0391 0.3667 8.3 7ucw:A, 7ucw:C, 7ucw:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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