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BioLiP
>protein
HFEEGERVLAKHSDCFYEAKVLKVEFKDNEWKYFVHYIGWNKSWDEWIRLDCLLKHS

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pl6:A 57 57 1.0000 1.0000 1.0000 2.70e-37 4pl6:B, 4pli:A, 4pli:B, 4pll:A, 4pll:B
2 3oa6:A 84 66 0.3860 0.2619 0.3333 1.16e-05 3oa6:B
3 8iht:N 295 76 0.4035 0.0780 0.3026 0.001 8hxx:M, 8hxy:M, 8hxz:M, 8hy0:M, 8ihm:N, 8jho:M, 8jho:O, 8kd7:D, 8tof:D, 8tof:E, 7yi1:L, 7yi1:K, 7yi4:E, 7yi4:C, 7yi5:E, 7yi5:C
4 8kd3:D 231 47 0.3158 0.0779 0.3830 0.010 8kd3:F, 8kd4:D, 8kd4:F, 8kd5:D, 8kd5:F, 8kd6:D, 8kd6:F
5 8w9f:G 69 50 0.3509 0.2899 0.4000 0.016
6 7zk3:A 721 37 0.2281 0.0180 0.3514 0.25 7b5c:A, 7b5c:B, 7b5e:A, 7b5e:B, 5oyb:A, 5oyb:B, 7zk3:B
7 6l1p:C 70 52 0.2807 0.2286 0.3077 0.40 6l1f:B, 6l1p:B, 6l1p:A, 6l1p:D
8 6l5t:A 234 49 0.2456 0.0598 0.2857 0.73
9 6x33:B 3816 41 0.2105 0.0031 0.2927 1.3 8drp:A, 8drp:B, 8drp:C, 8drp:D, 6x33:E, 6x33:H, 6x33:K
10 6x32:B 3798 41 0.2105 0.0032 0.2927 1.4 6x32:E, 6x32:H, 6x32:K
11 6w1n:B 3719 41 0.2105 0.0032 0.2927 1.4 6w1n:D, 6w1n:F, 6w1n:H, 6x34:B, 6x34:D, 6x34:F, 6x34:H
12 4z3g:A 198 16 0.1404 0.0404 0.5000 2.0 1j8r:A, 4z3e:A, 4z3f:A, 4z3g:B, 4z3h:A
13 5eq0:A 55 43 0.2105 0.2182 0.2791 4.3 3i91:A
14 6skl:4 679 24 0.2105 0.0177 0.5000 4.5 8kg9:4, 8xgc:4
15 4c5i:A 423 18 0.1228 0.0165 0.3889 4.6
16 8wg1:D 685 10 0.1053 0.0088 0.6000 4.8 8wg0:A, 8wg0:B, 8wg0:C, 8wg0:D, 8wg1:A, 8wg1:B, 8wg1:C, 8wg2:A, 8wg2:B, 8wg2:C, 8wg2:D
17 3a9b:A 374 20 0.1404 0.0214 0.4000 4.8 3abx:A, 3vof:A
18 3ut1:A 313 17 0.1579 0.0288 0.5294 5.8 4fl6:A, 4fl6:B, 4l59:A
19 6t5z:A 174 20 0.1053 0.0345 0.3000 6.2 6t5z:B, 6t5z:C
20 3umv:A 472 48 0.2807 0.0339 0.3333 6.7 3umv:B
21 5xfr:A 309 47 0.2982 0.0550 0.3617 7.3 5xfr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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