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BioLiP
>protein
HELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLDVVLPQLHEAMGGQGRLFAQVMATTAEGMVNDALKLRSIIA
DIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQA
KVLAASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWQGAFGRTSI

The query sequence (length=220) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5zol:A 222 219 0.9818 0.9730 0.9863 6.25e-157 4s1f:B, 4s1f:G, 4s1f:H, 4s1f:K, 4s1f:P, 5zol:B, 5zol:C, 5zol:D, 5zol:E, 5zol:F, 5zol:G, 5zol:H, 5zol:I, 5zol:J
2 3s1u:C 223 215 0.3227 0.3184 0.3302 1.01e-37 3s1u:A, 3s1u:B, 3s1u:D, 3s1u:E, 3s1v:A, 3s1v:B, 3s1v:C, 3s1v:D, 3s1v:E, 3s1x:A, 3s1x:B, 3s1x:C, 3s1x:D, 3s1x:E, 4xz9:B, 4xz9:C, 6yr3:A, 6yr3:B, 6yr3:C, 6yr3:D, 6yr3:E, 6yrh:A, 6yrh:B, 6yrh:C, 6yrh:D, 6yrh:E, 6yrm:A, 6yrm:B, 6yrm:C, 6yrm:D, 6yrm:E, 6yrt:A, 6yrt:B, 6yrt:C, 6yrt:D, 6yrt:E, 6ys0:A, 6ys0:B, 6ys0:C, 6ys0:D, 6ys0:E
3 8bc3:A 217 216 0.2500 0.2535 0.2546 4.76e-22 8bc3:H, 8bc3:B, 8bc3:C, 8bc3:D, 8bc3:E, 8bc3:F, 8bc3:G, 8bc3:I, 8bc3:J, 8bc4:A, 8bc4:B, 8bc4:C, 8bc4:D, 8bc4:E, 8bc4:F, 8bc4:G, 8bc4:H, 8bc4:J
4 3tk7:A 320 119 0.1727 0.1187 0.3193 5.61e-11 3te9:A, 3te9:B, 3tk7:B, 3tkf:A, 3tkf:B, 3tno:A, 3tno:B, 3upb:A, 3upb:B
5 3kof:A 316 118 0.1591 0.1108 0.2966 1.04e-07 3kof:B, 4s2b:A, 4s2b:B, 4s2c:A, 4s2c:B
6 6zwf:A 352 96 0.1500 0.0938 0.3438 0.002
7 3ihb:A 450 86 0.1364 0.0667 0.3488 2.0 3age:A, 3age:B, 3iha:A, 3iha:B, 3ihb:B
8 3wqy:A 905 101 0.1273 0.0309 0.2772 2.8 3wqy:B, 3wqz:A, 3wqz:B, 2ztg:A
9 2gjs:A 150 70 0.1045 0.1533 0.3286 3.8 2dpx:A, 2dpx:B, 2gjs:B, 3q72:A, 3q72:B, 3q7p:A, 3q7p:B, 3q7q:A, 3q7q:B
10 1kq3:A 364 54 0.0682 0.0412 0.2778 4.0
11 7r04:A 2326 41 0.0818 0.0077 0.4390 6.2
12 7pgr:N 2423 41 0.0818 0.0074 0.4390 6.2 2d4q:A, 2d4q:B, 2e2x:B, 3p7z:B, 3pg7:B, 7pgq:F, 7pgr:F, 7pgs:F, 7pgt:F, 7pgu:F, 7pgu:N
13 5cy1:A 183 93 0.1091 0.1311 0.2581 6.7 5cy1:B, 5cy2:A, 5cy2:B, 5cy2:E, 5cy2:F
14 5jm6:A 445 50 0.0864 0.0427 0.3800 7.1 5jm6:E, 5jm6:F, 5jm6:B, 5jm6:C, 5jm6:D
15 2x8u:A 399 57 0.0864 0.0476 0.3333 7.6 2x8u:B
16 2a1y:A 301 60 0.0864 0.0631 0.3167 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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