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BioLiP
>protein
HEALLEAGGVVRLSVHRPTLEEYLLHMKRSATPTAPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVES
YEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNITQVLE
LVRAAEAHPFRLERVLEVGWREWEVRLPVAHPRFQQVGHTAFLVALRRWKA

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2pwy:A 251 219 0.9905 0.8327 0.9543 1.11e-143 5c0o:E, 5c0o:F, 5c0o:G, 5c0o:H, 2pwy:B
2 2b25:A 254 200 0.3839 0.3189 0.4050 6.91e-38 2b25:B
3 1i9g:A 264 219 0.4171 0.3333 0.4018 9.22e-37
4 3mb5:A 255 199 0.3555 0.2941 0.3769 1.15e-29 3lga:A, 3lga:B, 3lga:C, 3lga:D, 3lhd:C, 3lhd:A, 3lhd:B, 3lhd:D
5 2yvl:A 247 203 0.3412 0.2915 0.3547 9.56e-25 2yvl:B, 2yvl:C, 2yvl:D
6 5ccx:A 283 210 0.2607 0.1943 0.2619 8.68e-08 5ccb:A, 5cd1:A, 5cd1:D
7 1dl5:A 317 92 0.1611 0.1073 0.3696 4.78e-07 1dl5:B
8 5erg:B 324 193 0.2180 0.1420 0.2383 9.50e-07
9 4o29:A 207 83 0.1327 0.1353 0.3373 2.30e-05
10 1jg1:A 215 99 0.1611 0.1581 0.3434 9.60e-05 1jg2:A, 1jg3:A, 1jg3:B, 1jg4:A
11 3dh0:B 190 116 0.1517 0.1684 0.2759 8.44e-04 3dh0:A
12 7cvx:B 220 80 0.1090 0.1045 0.2875 0.001 7cvv:A, 7cvv:B, 7cvv:C, 7cvw:A, 7cvw:B, 7cvx:A
13 4l7v:A 186 47 0.0995 0.1129 0.4468 0.011
14 3lbf:A 207 87 0.1327 0.1353 0.3218 0.011 3lbf:B, 3lbf:C, 3lbf:D
15 5bxy:A 155 88 0.1137 0.1548 0.2727 0.017 5bxy:B
16 1i1n:A 224 107 0.1611 0.1518 0.3178 0.021 1kr5:A
17 8h0s:B 171 57 0.0853 0.1053 0.3158 0.031 8h0s:D, 4poo:B
18 8h0s:C 190 57 0.0853 0.0947 0.3158 0.037 8h0s:A, 8h0t:A, 4poo:A
19 7dmb:A 358 82 0.1280 0.0754 0.3293 0.051 7dmb:B
20 8h1b:B 193 82 0.1043 0.1140 0.2683 0.059 8h1b:A, 8h26:A, 8h26:B, 8h26:C, 8h26:D, 8h27:B
21 6jcl:G 219 44 0.0900 0.0868 0.4318 0.063 6jcl:A, 6jcl:C, 6jcl:B, 6jcl:E, 6jcl:D, 6jcl:H, 6jcl:F
22 3m6w:A 460 45 0.0948 0.0435 0.4444 0.087 3m6v:A, 3m6v:B
23 3bus:A 251 85 0.1327 0.1116 0.3294 0.12 3bus:B
24 3sxj:A 245 74 0.0995 0.0857 0.2838 0.13 3sxj:B, 3t0i:A, 3t0i:B
25 6bqc:A 348 45 0.0806 0.0489 0.3778 0.14
26 3eey:A 195 54 0.0758 0.0821 0.2963 0.17 3eey:B, 3eey:C, 3eey:D, 3eey:E, 3eey:F, 3eey:H, 3eey:I, 3eey:J
27 5x7f:A 198 101 0.1327 0.1414 0.2772 0.17
28 7vvw:B 265 57 0.0995 0.0792 0.3684 0.20 7vvx:A
29 7vvw:C 281 57 0.0995 0.0747 0.3684 0.21 7vvw:A, 7vvx:B
30 8c9s:A 223 61 0.0948 0.0897 0.3279 0.22 8c9s:B
31 1r18:A 223 30 0.0664 0.0628 0.4667 0.23
32 3duw:A 220 80 0.1137 0.1091 0.3000 0.25 3duw:B
33 5wp5:A 463 28 0.0569 0.0259 0.4286 0.27 5wp5:B
34 6p3o:A 341 80 0.1137 0.0704 0.3000 0.31 6p3m:A, 6p3n:A
35 2bh2:A 418 86 0.1280 0.0646 0.3140 0.51 2bh2:B, 1uwv:A
36 3t7s:A 246 102 0.0995 0.0854 0.2059 0.55 3t7s:B, 3t7s:C, 3t7s:D, 3t7t:A, 3t7t:B, 3t7t:C, 3t7t:D
37 5bp7:A 249 136 0.1706 0.1446 0.2647 0.55 5bp7:B, 5bp7:C
38 3cjt:A 254 67 0.1280 0.1063 0.4030 1.1 3cjq:A, 3cjq:D, 3cjq:G, 3cjr:A, 3cjt:C, 3cjt:E, 3cjt:G, 3cjt:I, 3cjt:K, 3cjt:M, 3cjt:O, 3egv:A, 2nxe:A, 2nxe:B, 2zbp:A, 2zbq:A, 2zbr:A
39 5wp4:A 485 28 0.0521 0.0227 0.3929 1.4
40 2pbf:A 218 22 0.0521 0.0505 0.5000 1.5 2pbf:B
41 1l3i:A 186 95 0.1185 0.1344 0.2632 1.6 1l3i:B, 1l3i:C, 1l3i:D, 1l3i:E, 1l3i:F
42 2glu:A 234 174 0.2038 0.1838 0.2471 1.8 2glu:B
43 8c9v:A 187 111 0.1517 0.1711 0.2883 2.1
44 7d4i:3B 242 79 0.1280 0.1116 0.3418 2.6 7aju:CB, 7d4i:3C, 7d5s:3C, 7d5t:3B, 7d5t:3C, 7d63:3C, 6ke6:3C, 6lqp:3C, 6lqq:3C, 6lqr:3C, 6lqs:3C, 6lqt:3C, 6lqu:3C, 6lqv:3C, 7suk:SD, 5wlc:SD, 6zqd:CA, 6zqd:CB
45 6kms:C 210 44 0.0664 0.0667 0.3182 3.1 8cnc:A, 6h1d:A, 6h1e:A, 6k0x:A, 6khs:A, 6kmr:B, 6kms:D, 6ped:A, 8qdg:A, 8qdi:A
46 7aju:JL 283 78 0.1043 0.0777 0.2821 3.8 8cbj:y, 6rbd:y, 7wtl:JL, 7wtm:JL, 6zqd:JL, 6zqe:JL, 6zqf:JL, 6zqg:JL
47 2gpy:B 192 143 0.1706 0.1875 0.2517 4.2 2gpy:A
48 7wdq:A 336 36 0.0521 0.0327 0.3056 4.3 7wdq:B, 7wdq:C, 7wdw:A, 7wdw:B, 7wdw:C, 7wdw:D
49 7mqa:SC 229 57 0.0900 0.0830 0.3333 5.7 2ipx:A, 7se7:A, 7se8:A, 7se8:B, 7se9:A, 7se9:B, 7sea:A, 7seb:A, 7sec:A, 7sec:B, 7sed:A
50 5epe:A 248 78 0.1090 0.0927 0.2949 6.1
51 2yxl:A 443 46 0.0711 0.0339 0.3261 6.2
52 8fkt:SY 378 59 0.0758 0.0423 0.2712 8.5 8fku:SY, 8fkv:SY, 8fkw:SY, 8fkx:SY, 8fky:SY
53 1eiz:A 180 40 0.0521 0.0611 0.2750 8.8 1ej0:A
54 6kr5:B 336 25 0.0569 0.0357 0.4800 9.4 6kr5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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