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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HDTIQLTAQRKYLAEVQALETLLARELSVFLTEPGSKKTNIINRITGKTYALPSTELLRFYEHLEQCRKQGALMYFLERQ
GTYSGLMLDYDLKLNTNAAPSLESSVLSRLCHRIFVHIKNSSVLPEGSHKIHFFFTLKPEAVQGKYGFHVLIPGLKMAAS
TKKSIIASLQHDATVQKILHEQGVANPESCLDPHSASVPSLLYGSSKLNHRPYQLKTGFELVFDSSDPDYIPIHQIKNIE
SYNLVSELSLTNEQGSLVRPVYCAADADDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFALANTSANYRPL
AEWFSQKCPEKWNTGGKEKLEKLWNDASRHTEKKITKRSIMYWAHKHAPQQYKEIVEQGYFSILAEYVYSYNGTLEHYMI
AKVIYAMMGNKFVVDVDSNGKYVWFEFVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHET
NILNYYKKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPYLLGVGNGVLSIETIPAKLINHFHEHPIHQ
YTHICYEPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYA
SKLNISLLTSYRETAEKPNSAFMRLKGRGYGYFEETNKSEILNTSRLKEMVNPGDVTARELNQKQESFQMTATMVAASNY
NFIIDTTDHGTWRRLRHYRSKVKFCHNPDPNNSYEKKEDPRFIHEYIMDPNCQNAFFSILVYFWEKLQKEYNGQIKKVFC
PTIESETEAYRKSQDTLHRFITERVVESPSAETVYNLSEVVTAYAEWYNANINVKRHIALELSQELENSVLEKYLQWSPN
KTRILKGCRILHKFETLQPGCEPKNKWWEWSPNPS

The query sequence (length=915) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8iqi:C 916 916 1.0000 0.9989 0.9989 0.0 8iqc:A, 8iqc:B, 8iqd:A, 8iqd:B, 8iqd:C, 8iqd:D, 8iqi:A, 8iqi:B, 8iqi:D, 8iqi:E, 8iqi:F
2 8wh6:E 751 250 0.0634 0.0772 0.2320 0.004 8apm:A, 8apm:F, 8apm:E, 8hwa:A, 8hwa:C, 8hwa:D, 8hwa:E, 8hwa:F, 8hwa:B, 8hwb:A, 8hwb:C, 8hwb:D, 8hwb:E, 8hwb:B, 8hwd:B, 8hwe:D, 8hwe:E, 8hwe:C, 8hwe:B, 8hwf:C, 8hwf:B, 8hwf:E, 8hwf:D, 8hwf:A, 8hwf:F, 8hwg:C, 8hwg:B, 8hwg:D, 8hwg:A, 8hwg:E, 8hwg:F, 8hwh:C, 8wh4:B, 8wh4:C, 8wh4:F, 8wh6:C, 8wh6:A, 8wh6:B, 8wh6:D, 8xj6:B, 8xj6:C, 8xj6:E, 8xj6:F, 8xj7:B, 8xj7:C, 8xj7:D, 8xj7:A, 8xj8:A, 8xj8:B, 8xj8:C
3 8hwh:A 353 179 0.0459 0.1190 0.2346 0.027 8xj8:D
4 7ood:t 96 42 0.0164 0.1562 0.3571 0.66 7p6z:t
5 8xj6:D 589 236 0.0579 0.0900 0.2246 0.78 8hwd:C, 8xif:A, 8xig:A, 8xj6:A, 8xj7:E
6 7pah:t 111 42 0.0164 0.1351 0.3571 0.88 7pai:t, 7paj:t, 7pak:t, 7pal:t, 7pam:t, 7pan:t, 7pao:t, 7paq:t, 7par:t, 7pas:t, 7pat:t, 7pau:t, 7ph9:t, 7pha:t, 7phb:t, 7phc:t, 7pi8:t, 7pi9:t, 7pia:t, 7pib:t, 7pic:t, 7pio:t, 7pip:t, 7piq:t, 7pir:t, 7pis:t, 7pit:t
7 7ovb:C 202 48 0.0153 0.0693 0.2917 1.5 6sz9:C, 5x1h:A, 5x1h:C, 5x1h:E, 5x1h:G, 5x1h:I, 5x1h:K, 5x1h:M, 5x1h:O, 5x1h:Q, 5x1h:S, 5x1h:U, 5x1h:W, 5x42:A, 5x42:C
8 3a46:A 288 28 0.0131 0.0417 0.4286 3.1 3a46:B, 4nrw:A, 4nrw:B, 3vk7:A, 3vk7:B, 3vk8:A, 3vk8:B
9 5uiv:A 225 52 0.0186 0.0756 0.3269 3.3
10 2ych:A 336 81 0.0273 0.0744 0.3086 3.7
11 9aue:A 415 138 0.0328 0.0723 0.2174 9.2 9au3:A, 9b0c:A
12 7mq8:SG 389 95 0.0284 0.0668 0.2737 9.7 7mq9:SG, 7mqa:SG

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218