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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HDEIISELRELCLNYIEQDERLSRQKLNFLGQREPRMVLIEGLKLLSRCIEIDSADKSGCTHNHDDKSVETILVESGIVC
PGLPLIIPDGYKLIDNSLILLECFVRSTPASFEKKFIEDTNKLACIREDLAVAGVTLVPIVDGRCDYDNSFMPEWANFKF
RDLLFKLLEYSNQDEKVFEESEY

The query sequence (length=183) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7x6v:A 1381 182 0.9891 0.1311 0.9945 3.68e-121
2 7x6s:A 1453 182 0.9891 0.1246 0.9945 5.25e-121 5ltf:A, 5ltn:A, 5ltn:B, 5t2t:A
3 6klc:A 1436 182 0.5355 0.0682 0.5385 9.27e-63
4 7ela:A 1402 182 0.5355 0.0699 0.5385 1.36e-62
5 7ojn:L 2010 176 0.5410 0.0493 0.5625 1.50e-62 5j1n:A, 5j1p:A, 4miw:A, 7oe7:L
6 7ojj:L 1785 176 0.5410 0.0555 0.5625 1.80e-62
7 7oe3:L 1478 176 0.5410 0.0670 0.5625 2.27e-62 7oea:L, 7oeb:L
8 7ojk:L 1843 176 0.5410 0.0537 0.5625 2.28e-62
9 7ckl:A 1415 182 0.5191 0.0671 0.5220 3.20e-58
10 7elb:A 1937 178 0.4208 0.0398 0.4326 6.34e-44 7ckm:A, 7elb:C, 6kld:A, 6kle:A, 6klh:A, 6klh:C
11 7eju:A 1648 182 0.4208 0.0467 0.4231 7.44e-42
12 7el9:A 1731 174 0.3333 0.0352 0.3506 4.35e-21 7el9:D, 7elc:A
13 1vg0:A 481 42 0.0874 0.0333 0.3810 2.6
14 3pvs:D 424 54 0.0874 0.0377 0.2963 6.4 3pvs:A, 3pvs:B
15 5mpt:A 379 89 0.1475 0.0712 0.3034 6.6
16 4wjb:A 409 59 0.0874 0.0391 0.2712 7.0 4wjb:B, 4wjb:C, 4wjb:D
17 8y6o:U 458 76 0.1202 0.0480 0.2895 7.7 8h6e:4T, 8h6j:4T, 6qw6:U, 6qx9:U
18 7rr9:A 560 21 0.0437 0.0143 0.3810 8.3 7rr9:B, 7vx8:B, 7vx8:A
19 7x0z:B 580 21 0.0437 0.0138 0.3810 8.3 7shm:A, 7shm:B, 7x0z:A
20 7x07:A 633 21 0.0437 0.0126 0.3810 8.4 7shn:A, 7shn:B, 7vzb:A, 7vzb:B, 7x0t:A, 7x0t:B, 7x1w:A, 7x1w:B, 7xec:A, 7yrq:A, 7yrq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218